Miyakogusa Predicted Gene
- Lj0g3v0056329.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0056329.1 Non Chatacterized Hit- tr|D7MG48|D7MG48_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,33.49,9e-19,ssb: single-stranded DNA-binding
protein,Single-strand DNA-binding; SSB,Primosome
PriB/single-strand,NODE_41833_length_825_cov_115.176971.path2.1
(231 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand DNA-b... 117 8e-27
AT4G20010.2 | Symbols: PTAC9, OSB2 | plastid transcriptionally a... 103 9e-23
AT4G20010.1 | Symbols: PTAC9, OSB2 | plastid transcriptionally a... 101 4e-22
AT5G44785.2 | Symbols: OSB3 | organellar single-stranded DNA bin... 88 5e-18
AT5G44785.1 | Symbols: OSB3 | organellar single-stranded DNA bin... 88 5e-18
AT1G31010.1 | Symbols: OSB4 | organellar single-stranded DNA bin... 86 2e-17
>AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand
DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261
Length = 261
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 9/207 (4%)
Query: 7 YPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKK--NATQTSWVNLT 64
+ KP + L NSVSL+G V +++ + + +T L VK N ++ ++L
Sbjct: 42 FKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISLR 101
Query: 65 FWDELAHVAFQHVQKGHQIHVSGRLVADTVETDE--GKQQTYYKVVAQELNFIDRSFSQV 122
WD +A H++ I VSGRL + + + + Y+V E+N++ S V
Sbjct: 102 MWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHV 161
Query: 123 NSQDQDSDFMMSGNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRNPKAPDFKHK 182
DS + + S + LWQ FF+NP +WWDNR K+NPK PDFKHK
Sbjct: 162 ----LDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHK 217
Query: 183 DTGEALWIEGRSTPSWVNSQLEIMDSR 209
DTGEALW+ P W+ +LE+ D +
Sbjct: 218 DTGEALWL-CSDLPDWITRRLELFDQK 243
>AT4G20010.2 | Symbols: PTAC9, OSB2 | plastid transcriptionally
active 9 | chr4:10842128-10843989 FORWARD LENGTH=371
Length = 371
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 21/220 (9%)
Query: 2 STNASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS-- 59
+T P+P+EI ++ E+ N V+LIG V PV+ + GK + T ++ +++A+ +S
Sbjct: 80 TTENELPRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVIS-QRSASDSSGF 138
Query: 60 WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFID--- 116
W+ + F +LA A ++V K QIHVSG+L D+ + Q +V+ Q LNFI
Sbjct: 139 WIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMS 198
Query: 117 ---RSFSQVNSQDQDSDFMMSGNGRKAGYAANS--TGSVMELWQAFFANPGEWWDNRNKK 171
F ++S +++ SG ++ G A + W NP EWWD+R K
Sbjct: 199 PSPSPFMVMSSSEKEE----SGIKKQPGIAKQDIVIDEASDSWNHLIENPKEWWDHRENK 254
Query: 172 RN----PKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMD 207
N P+ PDFK KD+ +LW+ P+WV +LE ++
Sbjct: 255 VNGLVKPRHPDFKSKDSSFSLWL--NKAPNWVLPKLEGLE 292
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSRMG 211
E W+ NP +WWDNR KRN KAPDFKHK+TGEALW+ +P+WV +L + +
Sbjct: 310 ESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKLPPVKKKQE 367
Query: 212 SFT 214
S
Sbjct: 368 SIV 370
>AT4G20010.1 | Symbols: PTAC9, OSB2 | plastid transcriptionally
active 9 | chr4:10842128-10843989 FORWARD LENGTH=371
Length = 371
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 17/218 (7%)
Query: 2 STNASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS-- 59
+T P+P+EI ++ E+ N V+LIG V PV+ + GK + T ++ +++A+ +S
Sbjct: 80 TTENELPRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVIS-QRSASDSSGF 138
Query: 60 WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFID--- 116
W+ + F +LA A ++V K QIHVSG+L D+ + Q +V+ Q LNFI
Sbjct: 139 WIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMS 198
Query: 117 ---RSFSQVNSQDQDSDFMMSGNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRN 173
F ++S +++ + R S + W NP EWWD+R K N
Sbjct: 199 PSPSPFMVMSSSEKEESGIKKQPARAKQDIVIDEAS--DSWNHLIENPKEWWDHRENKVN 256
Query: 174 ----PKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMD 207
P+ PDFK KD+ +LW+ P+WV +LE ++
Sbjct: 257 GLVKPRHPDFKSKDSSFSLWL--NKAPNWVLPKLEGLE 292
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSRMG 211
E W+ NP +WWDNR KRN KAPDFKHK+TGEALW+ +P+WV +L + +
Sbjct: 310 ESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKLPPVKKKQE 367
Query: 212 SFT 214
S
Sbjct: 368 SIV 370
>AT5G44785.2 | Symbols: OSB3 | organellar single-stranded DNA
binding protein 3 | chr5:18070877-18073010 REVERSE
LENGTH=442
Length = 442
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 15/205 (7%)
Query: 10 PSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS-WVNLTFWDE 68
P +I ++ E+ N ++LIG V PV+ GK + T ++ + + ++ W+ + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 69 LAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNSQDQD 128
LA +A QHV+K +IHVSG+L D+ + Q+ +V+ Q LNF+ + S +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 129 SDFMMS-----GNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRN----PKAPDF 179
+ S +K T + W+ NP EW D+R K N P PDF
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNS---WKHLIENPKEWLDHRGNKANGLVKPGHPDF 247
Query: 180 KHKDTGEALWIEGRSTPSWVNSQLE 204
K K G +LW+ + P W +LE
Sbjct: 248 KMKVGGLSLWLS--TAPDWALLKLE 270
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 203
E+W+ NP +WWDNR KRNPK PDFKHK+TGEALWI +P+W S+L
Sbjct: 380 EIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWI--GDSPTWALSKL 429
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 203
E W+ NP +W DNR+ K N K PDFKHK+TGEALW+ ++P WV S+L
Sbjct: 294 ESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWM--TNSPIWVLSKL 343
>AT5G44785.1 | Symbols: OSB3 | organellar single-stranded DNA
binding protein 3 | chr5:18070877-18073010 REVERSE
LENGTH=440
Length = 440
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 15/205 (7%)
Query: 10 PSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS-WVNLTFWDE 68
P +I ++ E+ N ++LIG V PV+ GK + T ++ + + ++ W+ + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 69 LAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNSQDQD 128
LA +A QHV+K +IHVSG+L D+ + Q+ +V+ Q LNF+ + S +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 129 SDFMMS-----GNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRN----PKAPDF 179
+ S +K T + W+ NP EW D+R K N P PDF
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNS---WKHLIENPKEWLDHRGNKANGLVKPGHPDF 247
Query: 180 KHKDTGEALWIEGRSTPSWVNSQLE 204
K K G +LW+ + P W +LE
Sbjct: 248 KMKVGGLSLWLS--TAPDWALLKLE 270
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 203
E+W+ NP +WWDNR KRNPK PDFKHK+TGEALWI +P+W S+L
Sbjct: 378 EIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWI--GDSPTWALSKL 427
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 203
E W+ NP +W DNR+ K N K PDFKHK+TGEALW+ ++P WV S+L
Sbjct: 292 ESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWM--TNSPIWVLSKL 341
>AT1G31010.1 | Symbols: OSB4 | organellar single-stranded DNA
binding protein 4 | chr1:11054926-11056873 REVERSE
LENGTH=360
Length = 360
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 118/241 (48%), Gaps = 34/241 (14%)
Query: 3 TNASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS--- 59
++ +P+P E+P+Q ++ NS+ LIG V PV+ GK + T ++ + ++ S
Sbjct: 55 SSEEWPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESD 114
Query: 60 -----WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTY---------- 104
W+ + F +LAH A +++K ++H++G+++ D +++ Q +
Sbjct: 115 SSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGS 174
Query: 105 --YKVVAQELNFIDRSFSQ---VNSQDQDSDFMMSGNGRKAGYAANSTGSVMELWQAFFA 159
++V+ ++L++I+ S + + + DQ+ + + G + LW
Sbjct: 175 FSHQVMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTN-----LWFDLVD 229
Query: 160 NPGEWWDNRNKKR----NPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSRMGSFTG 215
P EW D R K+ NPK PDFK KD +ALW+ + P+ + S+L+ + + +
Sbjct: 230 KPNEWCDYREMKQNGSVNPKHPDFKKKDGSQALWL--NNAPTEILSELKDVKFDIPKYAK 287
Query: 216 Q 216
Q
Sbjct: 288 Q 288
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSRMG 211
E W+ N +WWDNR KR PK+PDFKHK+TG LW+ +PSWV +L S+
Sbjct: 294 ESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLS--DSPSWVLEKLPPPKSKTS 351
Query: 212 SFTG 215
G
Sbjct: 352 DIYG 355