Miyakogusa Predicted Gene

Lj0g3v0056169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0056169.1 Non Chatacterized Hit- tr|B9RBH6|B9RBH6_RICCO
Ribonucleoside-diphosphate reductase small chain,
puta,85.11,0,Ribonuc_red_sm,Ribonucleotide reductase small subunit;
SUBFAMILY NOT NAMED,NULL; RIBONUCLEOSIDE-DIPH,CUFF.2468.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27060.1 | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide re...   526   e-150
AT3G23580.1 | Symbols: RNR2, RNR2A | ribonucleotide reductase 2A...   464   e-131

>AT3G27060.1 | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide
           reductase-like family protein | chr3:9979971-9981057
           REVERSE LENGTH=332
          Length = 332

 Score =  526 bits (1356), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/332 (78%), Positives = 281/332 (84%), Gaps = 6/332 (1%)

Query: 1   MPVMAEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDW-DSLNDG 59
           MP M EEPLL P PDRFCMFPI YP+IW+MYKKA ASFWTAEEVDLS D RDW +SLNDG
Sbjct: 1   MPSMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDG 60

Query: 60  ERHFITHVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLET 119
           ERHFI HVLAFFAASDGIVLENLA RFM +VQ++EARAFYGFQIAIENIHSEMYSLLL+T
Sbjct: 61  ERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDT 120

Query: 120 YIKDSTEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAI 179
           YIKD+ E+  LF A+ETIPCVAKKA+WAMKWID S +FAER++AFACVEGIFFSGSFC+I
Sbjct: 121 YIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSI 180

Query: 180 FWLKKRGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREF 239
           FWLKKRGLMPGLTFSNELISRDEGLHCDFAC             RVK IV DAVEIEREF
Sbjct: 181 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSEERVKSIVCDAVEIEREF 240

Query: 240 VCDALPCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFE 299
           VCDALPCAL+GMN D MSQYIEFVAD  L  LG GKVY V NPF WMELISL+GKTNFFE
Sbjct: 241 VCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVTNPFDWMELISLQGKTNFFE 300

Query: 300 KRVGEYQIASVM---NGDG--DARVFNMDEEF 326
           KRVG+YQ ASVM   NG+G  D  VF++DE+F
Sbjct: 301 KRVGDYQKASVMSSVNGNGAFDNHVFSLDEDF 332


>AT3G23580.1 | Symbols: RNR2, RNR2A | ribonucleotide reductase 2A |
           chr3:8460261-8462574 FORWARD LENGTH=341
          Length = 341

 Score =  464 bits (1194), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/326 (69%), Positives = 259/326 (79%), Gaps = 5/326 (1%)

Query: 5   AEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDWDSLNDGERHFI 64
           +EEPLL     RF MFPI+Y  IW+MYKKA ASFWTAEEVDLS D++ W++L D E+HFI
Sbjct: 17  SEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFI 76

Query: 65  THVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
           +H+LAFFAASDGIVLENLA RF+ +VQ+ EARAFYGFQIA+ENIHSEMYSLLLET+IKDS
Sbjct: 77  SHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDS 136

Query: 125 TEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAIFWLKK 184
            EK RLF+A+ETIPC++KKA+W + WI +  SFA R+VAFACVEGIFFSGSFCAIFWLKK
Sbjct: 137 KEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKK 196

Query: 185 RGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREFVCDAL 244
           RGLMPGLTFSNELISRDEGLHCDFAC             +V  IV +AVEIE EFVC AL
Sbjct: 197 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPLEKVYQIVHEAVEIETEFVCKAL 256

Query: 245 PCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVGE 304
           PC L+GMN + MSQYI+FVAD  L  LGC + Y   NPF WME ISL+GKTNFFEKRVGE
Sbjct: 257 PCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYKAENPFDWMEFISLQGKTNFFEKRVGE 316

Query: 305 YQIASVM----NGDGDARVFNMDEEF 326
           YQ ASVM    NG+ +   F  +E+F
Sbjct: 317 YQKASVMSNLQNGNQNYE-FTTEEDF 341