Miyakogusa Predicted Gene

Lj0g3v0055359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0055359.1 NODE_18561_length_2293_cov_62.689926.path1.1
         (587 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSP...   363   e-100
AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 | ...   357   1e-98
AT5G17310.1 | Symbols: UGP2, AtUGP2 | UDP-glucose pyrophosphoryl...   340   2e-93
AT3G03600.1 | Symbols: RPS2 | ribosomal protein S2 | chr3:867847...   214   2e-55

>AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE
           PYROPHOSPHORYLASE 1 | chr3:749761-754014 REVERSE
           LENGTH=469
          Length = 469

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/433 (45%), Positives = 270/433 (62%), Gaps = 21/433 (4%)

Query: 172 APRIEESKGKSDLAKVDLTVIPYANLAPLHEEDMEEAXXXXXXXXXXXFNGAPDSNMGFE 231
           A  IE SK ++     D  V+PY  + P+  +D+ E             NG   + MG  
Sbjct: 41  AQHIEWSKIQT---PTDEIVVPYEKMTPV-SQDVAETKNLLDKLVVLKLNGGLGTTMGCT 96

Query: 232 DPKSTIDICDGLTLLDLIINQIETLNSKYGCRLPLLISDKDDTHDNTAKVLEKYSKSSVD 291
            PKS I++ DGLT LDLI+ QIE LN+KYGC++PL++ +  +THD+T K++EKY+ S+VD
Sbjct: 97  GPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVD 156

Query: 292 LRTLKQGESPELKL-------PGGLHSKEEVNPFDNADIFHSLMIDGTLDLLLSQGKEYI 344
           + T  Q + P +           G   KE   P  + D+F +LM  G LD  LSQGKEY+
Sbjct: 157 IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYV 216

Query: 345 LVMKSDNVATVIDPNILNHLMTNDIEYCMEVTPS-----HSFNLILTPMNFKLQEIAQNQ 399
            V  SDN+  ++D  IL HL+ N  EYCMEVTP          LI      +L EIAQ  
Sbjct: 217 FVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVP 276

Query: 400 DKQLRD-----NCKLIDTRNTWVSLRAIKRLVETNRLKHKMPSETKENDYDQTLLPDSEA 454
           D+ + +       K+ +T N WV+L+AIK+LVE + LK ++    KE D  + L  ++ A
Sbjct: 277 DEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAA 336

Query: 455 GPEKQLFNNMIGVSVPESRFHPLDATSDLLILQSDLYMCREGVLTRNPARANPLNPVIDL 514
           G   + F+N IGV+VP SRF P+ A+SDLL++QSDLY   +G +TRN AR NP NP I+L
Sbjct: 337 GAAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIEL 396

Query: 515 GPEFEKILDFQSRFRSIPSIIGLDSLMVRGDVWFGTNITLKGQVTIAAKPGLKLEIPDGA 574
           GPEF+K+  F SRF+SIPSI+ LDSL V GDVWFG++I LKG+VT+AAK G+KLEIPD A
Sbjct: 397 GPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRA 456

Query: 575 VIDNKEINDPTDI 587
           V++NK IN P D+
Sbjct: 457 VVENKNINGPEDL 469


>AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 |
           chr5:5696955-5700845 REVERSE LENGTH=470
          Length = 470

 Score =  357 bits (916), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/433 (45%), Positives = 266/433 (61%), Gaps = 21/433 (4%)

Query: 172 APRIEESKGKSDLAKVDLTVIPYANLAPLHEEDMEEAXXXXXXXXXXXFNGAPDSNMGFE 231
           A  IE SK ++     D  V+PY  +A +  ED  E             NG   + MG  
Sbjct: 42  AQHIEWSKIQT---PTDEIVVPYDKMANV-SEDASETKYLLDKLVVLKLNGGLGTTMGCT 97

Query: 232 DPKSTIDICDGLTLLDLIINQIETLNSKYGCRLPLLISDKDDTHDNTAKVLEKYSKSSVD 291
            PKS I++ DGLT LDLI+ QIE LN+KY C++PL++ +  +THD+T K++EKY+KS+VD
Sbjct: 98  GPKSVIEVRDGLTFLDLIVIQIENLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVD 157

Query: 292 LRTLKQGESPELKL-------PGGLHSKEEVNPFDNADIFHSLMIDGTLDLLLSQGKEYI 344
           + T  Q + P +           G   K+   P  + D+F SLM  G LD  LSQGKEY+
Sbjct: 158 IHTFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYV 217

Query: 345 LVMKSDNVATVIDPNILNHLMTNDIEYCMEVTPS-----HSFNLILTPMNFKLQEIAQNQ 399
            +  SDN+  ++D  IL HL+ N  EYCMEVTP          LI      +L EIAQ  
Sbjct: 218 FIANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVP 277

Query: 400 DKQLRD-----NCKLIDTRNTWVSLRAIKRLVETNRLKHKMPSETKENDYDQTLLPDSEA 454
           D+ + +       K+ +T N WV+L+AIK+LVE + LK ++    KE D  + L  ++ A
Sbjct: 278 DEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAA 337

Query: 455 GPEKQLFNNMIGVSVPESRFHPLDATSDLLILQSDLYMCREGVLTRNPARANPLNPVIDL 514
           G   + F+N IGV+VP SRF P+ ATSDLL++QSDLY   +G +TRN AR NP NP I+L
Sbjct: 338 GAAIRFFDNAIGVNVPRSRFLPVKATSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIEL 397

Query: 515 GPEFEKILDFQSRFRSIPSIIGLDSLMVRGDVWFGTNITLKGQVTIAAKPGLKLEIPDGA 574
           GPEF+K+  F SRF+SIPSI+ LDSL V GDVWFG+ + LKG+VT+ A  G KLEIPD A
Sbjct: 398 GPEFKKVASFLSRFKSIPSIVELDSLKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNA 457

Query: 575 VIDNKEINDPTDI 587
           V++NK+IN P D+
Sbjct: 458 VLENKDINGPEDL 470


>AT5G17310.1 | Symbols: UGP2, AtUGP2 | UDP-glucose pyrophosphorylase
           2 | chr5:5696955-5699671 REVERSE LENGTH=390
          Length = 390

 Score =  340 bits (871), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/371 (47%), Positives = 242/371 (65%), Gaps = 17/371 (4%)

Query: 234 KSTIDICDGLTLLDLIINQIETLNSKYGCRLPLLISDKDDTHDNTAKVLEKYSKSSVDLR 293
           +S I++ DGLT LDLI+ QIE LN+KY C++PL++ +  +THD+T K++EKY+KS+VD+ 
Sbjct: 20  RSVIEVRDGLTFLDLIVIQIENLNNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIH 79

Query: 294 TLKQGESPELKL-------PGGLHSKEEVNPFDNADIFHSLMIDGTLDLLLSQGKEYILV 346
           T  Q + P +           G   K+   P  + D+F SLM  G LD  LSQGKEY+ +
Sbjct: 80  TFNQSKYPRVVADEFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFI 139

Query: 347 MKSDNVATVIDPNILNHLMTNDIEYCMEVTPS-----HSFNLILTPMNFKLQEIAQNQDK 401
             SDN+  ++D  IL HL+ N  EYCMEVTP          LI      +L EIAQ  D+
Sbjct: 140 ANSDNLGAIVDLKILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDE 199

Query: 402 QLRD-----NCKLIDTRNTWVSLRAIKRLVETNRLKHKMPSETKENDYDQTLLPDSEAGP 456
            + +       K+ +T N WV+L+AIK+LVE + LK ++    KE D  + L  ++ AG 
Sbjct: 200 HVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGA 259

Query: 457 EKQLFNNMIGVSVPESRFHPLDATSDLLILQSDLYMCREGVLTRNPARANPLNPVIDLGP 516
             + F+N IGV+VP SRF P+ ATSDLL++QSDLY   +G +TRN AR NP NP I+LGP
Sbjct: 260 AIRFFDNAIGVNVPRSRFLPVKATSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGP 319

Query: 517 EFEKILDFQSRFRSIPSIIGLDSLMVRGDVWFGTNITLKGQVTIAAKPGLKLEIPDGAVI 576
           EF+K+  F SRF+SIPSI+ LDSL V GDVWFG+ + LKG+VT+ A  G KLEIPD AV+
Sbjct: 320 EFKKVASFLSRFKSIPSIVELDSLKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAVL 379

Query: 577 DNKEINDPTDI 587
           +NK+IN P D+
Sbjct: 380 ENKDINGPEDL 390


>AT3G03600.1 | Symbols: RPS2 | ribosomal protein S2 |
           chr3:867847-868506 REVERSE LENGTH=219
          Length = 219

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 120/153 (78%), Gaps = 3/153 (1%)

Query: 1   MAIIDSDKTLICMRSACNFMASLARHNGRFMFINTNPLFDEIFELMTKKL---GYYSPSS 57
           M IIDSDKTLIC+RSA +F+A+LA   G   F+NTNPLFDEI EL ++++    Y    +
Sbjct: 38  MTIIDSDKTLICLRSAAHFVANLAHMRGNIFFVNTNPLFDEIIELTSRRIQGDSYNHNRA 97

Query: 58  TSLWRTGGFLTNSYSPKKFRSRNKKLCFGPTQPPDCIVIVDTESKSSVFNEAFKLQIPVV 117
            +LW+ GGFLTNSYSPKKFRSR+KKLCFGPT  PDC+V+ D+E KSSV  EA KLQIPVV
Sbjct: 98  MNLWKMGGFLTNSYSPKKFRSRHKKLCFGPTTMPDCVVVFDSERKSSVILEASKLQIPVV 157

Query: 118 ALVDSTMPLETFNRIAYPVPANDSVKFVYLFCN 150
           A+VD  +PLE F +I YPVPA DSVKFVYLFCN
Sbjct: 158 AIVDPNVPLEFFEKITYPVPARDSVKFVYLFCN 190