Miyakogusa Predicted Gene

Lj0g3v0055339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0055339.1 Non Chatacterized Hit- tr|Q01DN1|Q01DN1_OSTTA
Putative 50S ribosomal protein L3 (ISS) OS=Ostreococcu,50,0.0002,50S
RIBOSOMAL PROTEIN L3,Ribosomal protein L3, bacterial/organelle-type;
Ribosomal_L3,Ribosomal
prot,NODE_17083_length_867_cov_472.347168.path1.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43030.1 | Symbols:  | Ribosomal protein L3 family protein | ...   333   4e-92
AT3G17465.1 | Symbols: RPL3P | ribosomal protein L3 plastid | ch...   103   9e-23

>AT2G43030.1 | Symbols:  | Ribosomal protein L3 family protein |
           chr2:17894898-17895713 FORWARD LENGTH=271
          Length = 271

 Score =  333 bits (855), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 166/220 (75%), Positives = 185/220 (84%)

Query: 1   MEAGVGVMGTKLGMMSYFEENGXXXXXXXXGFKEGNIVTQLKTEATDGYDAVQVGYQRIR 60
           MEAG+GVMG+KLGMMS+FEE+G        GF+EGNIVTQ+KT ATDGYDAVQ+GY+R+R
Sbjct: 52  MEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVR 111

Query: 61  DRKLTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIG 120
           D+KLTKPE GHL+K G IPMRHLQEFRL ++EGF+ NQ+LVFDE+FKEGDLVDV+GTTIG
Sbjct: 112 DKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIG 171

Query: 121 KGFQGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTXXXXXXXX 180
           KGFQGGIKR +FKRG M+HGSKSHR LGSIGAGTTPGRVY GKKMPGRMGGT        
Sbjct: 172 KGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLK 231

Query: 181 XXXXXXXXNVVMIKGALPGKPGNLLRITPAKIVGKNIPKN 220
                   NVVMIKGALPGKPGNLLRITPAKIVG NIPKN
Sbjct: 232 IVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271


>AT3G17465.1 | Symbols: RPL3P | ribosomal protein L3 plastid |
           chr3:5978059-5979572 REVERSE LENGTH=324
          Length = 324

 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 105/215 (48%), Gaps = 3/215 (1%)

Query: 6   GVMGTKLGMMSYFEENGXXXXXXXXGFKEGNIVTQLKTEATDGYDAVQVGYQRIRDRKLT 65
           G++  K GM + +++ G         + + NIV+Q+KT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 136

Query: 66  KPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIGKGFQG 125
           K  +GH    G    R L+EF +       +   L     F  G  VDV+G T GKGFQG
Sbjct: 137 KAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH-FVPGQYVDVTGITRGKGFQG 195

Query: 126 GIKRWNFKRGPMSHG-SKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTXXXXXXXXXXXX 184
            +KR  F   P SHG S SHR  GS G    PG+V+ G+KM GRMG              
Sbjct: 196 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 255

Query: 185 XXXXNVVMIKGALPGKPGNLLRITPAKIVGKNIPK 219
               N++ ++G +PG  GN + I  A     +I K
Sbjct: 256 DPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISK 290