Miyakogusa Predicted Gene

Lj0g3v0055269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0055269.1 NODE_58497_length_783_cov_81.735634.path1.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein...    92   1e-19
AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein...    90   5e-19

>AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein |
           chr2:18309285-18309713 FORWARD LENGTH=142
          Length = 142

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 7/139 (5%)

Query: 5   VVLNSSTVTEFMDDKAKFDSFVNERFAMVDENGDGELSRDEVRVRFGLFMPLGSE----- 59
           V+++ STV  F+DD+ +F   V+ERFA +D N DG LSR E+R  F     L S      
Sbjct: 4   VLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFGVDV 63

Query: 60  SQPKQEVDGMLDLIFKRFDEDQNGMLDLKEFKSLMTEIMNALARGIGGFPIMVAL--END 117
             P+ E+  + D IF++FD DQ+G +DL+EF+S M +I+ A+A G+G  PI + L  ++D
Sbjct: 64  VTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDDDDD 123

Query: 118 SLLMKAVQHELATYSSPSS 136
           + L KA   E +     SS
Sbjct: 124 NFLKKAADLEASKLEKASS 142


>AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein |
           chr1:20366505-20366888 FORWARD LENGTH=127
          Length = 127

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 4/125 (3%)

Query: 3   VAVVLNSSTVTEFMDDKAKFDSFVNERFAMVDENGDGELSRDEVRVRFGLFMPLGSESQP 62
           +  V+ S T+  F+ D   F+S  N+ F ++D + +G LS  E+R      + + SE  P
Sbjct: 2   IETVITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAP 61

Query: 63  KQEVDGMLDLIFKRFDEDQNGMLDLKEFKSLMTEIMNALARGIGGFPIMVALENDSLLMK 122
             E D + + IF+RF ED    L  K F+ L+ EI+ A+ARGIG  P+++ + ND L+MK
Sbjct: 62  GDETDNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLIMK 117

Query: 123 AVQHE 127
           AV HE
Sbjct: 118 AVLHE 122