Miyakogusa Predicted Gene

Lj0g3v0054489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054489.1 tr|B9NYQ5|B9NYQ5_PROMR NAD(P)H-quinone
oxidoreductase subunit N OS=Prochlorococcus marinus str. MIT
,39.29,8e-19,NdhN,NAD(P)H-quinone oxidoreductase, subunit
N,CUFF.2415.1
         (221 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58260.1 | Symbols:  | oxidoreductases, acting on NADH or NAD...   288   2e-78
AT5G58260.2 | Symbols:  | oxidoreductases, acting on NADH or NAD...   208   3e-54

>AT5G58260.1 | Symbols:  | oxidoreductases, acting on NADH or NADPH,
           quinone or similar compound as acceptor |
           chr5:23561075-23561929 REVERSE LENGTH=209
          Length = 209

 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/217 (65%), Positives = 168/217 (77%), Gaps = 13/217 (5%)

Query: 2   SAATSLGYGGPTCFHVTKRQQQTRNNTIG-MMTGWGGRRHYETSKKDVVGVVRCSGVGLG 60
           S A  +    P CF  +   Q  +  T+G  +     +R   T        V+CS +   
Sbjct: 3   SRAICIQRVAPPCFEAS---QVKKIKTVGSFLVNTRSKRRRSTG-------VKCSSIA-- 50

Query: 61  DFIGGDLLKPDLGRWLSDVEEHKALAIYSPHEGGYEGRYLSRLRRQGYYFLDLSARGLGD 120
           D+IGGDL+KPD+G+WL DVEEHKA+AIY+PHEGGYEGRYL+RL+ QGYYFLD+SARGLGD
Sbjct: 51  DYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGD 110

Query: 121 PETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVCIIEAKVLSKAELQ 180
           PETTL K +PVCP H+GKQPIARWY+PPEVDYRL ALPP+AKGLVV ++EAKVLSK+ELQ
Sbjct: 111 PETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKVLSKSELQ 170

Query: 181 FLALLPTLRPNVRVIAECGNWRKFMWKPLKEIAGLTA 217
           FLALLP+LRPNVRVIAECGNWRKF+WKPL EIA L A
Sbjct: 171 FLALLPSLRPNVRVIAECGNWRKFVWKPLAEIANLAA 207


>AT5G58260.2 | Symbols:  | oxidoreductases, acting on NADH or NADPH,
           quinone or similar compound as acceptor |
           chr5:23561356-23561929 REVERSE LENGTH=163
          Length = 163

 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 127/173 (73%), Gaps = 13/173 (7%)

Query: 2   SAATSLGYGGPTCFHVTKRQQQTRNNTIG-MMTGWGGRRHYETSKKDVVGVVRCSGVGLG 60
           S A  +    P CF  +   Q  +  T+G  +     +R   T        V+CS +   
Sbjct: 3   SRAICIQRVAPPCFEAS---QVKKIKTVGSFLVNTRSKRRRSTG-------VKCSSIA-- 50

Query: 61  DFIGGDLLKPDLGRWLSDVEEHKALAIYSPHEGGYEGRYLSRLRRQGYYFLDLSARGLGD 120
           D+IGGDL+KPD+G+WL DVEEHKA+AIY+PHEGGYEGRYL+RL+ QGYYFLD+SARGLGD
Sbjct: 51  DYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGD 110

Query: 121 PETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVCIIEAKV 173
           PETTL K +PVCP H+GKQPIARWY+PPEVDYRL ALPP+AKGLVV ++EAKV
Sbjct: 111 PETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKV 163