Miyakogusa Predicted Gene

Lj0g3v0054479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054479.1 Non Chatacterized Hit- tr|D8U478|D8U478_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,41.27,1e-18,seg,NULL; Ycf54,Uncharacterised protein family
Ycf54,CUFF.2408.1
         (236 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58250.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   159   2e-39

>AT5G58250.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: thylakoid,
           chloroplast; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2488
           (InterPro:IPR019616); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:23559558-23560372 FORWARD LENGTH=211
          Length = 211

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 89/142 (62%)

Query: 88  NLSSSDPATKKEANKYYFVIANAKFMLDXXXXXXXXXXXXXXXXXXXKMEQDFWLVIEPK 147
           ++       K E+ KY+F++ANAKFMLD                   ++ QDFWLVIEPK
Sbjct: 61  SIEQQSSVNKGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQDFWLVIEPK 120

Query: 148 FLDRFPGITKRLGRPAVALVSTNGPWITYMKLRLDRVLXXXXXXXXXXXXXXXNPTNLDF 207
           FLD FP IT+RL RPAVALVSTNG WIT+MKLRLDRVL               NPT L+F
Sbjct: 121 FLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALASNPTTLEF 180

Query: 208 GKPDKWVAPYPKYESGWWETFL 229
            KP  WVAPYPKYE GWW+TFL
Sbjct: 181 DKPKNWVAPYPKYEPGWWDTFL 202