Miyakogusa Predicted Gene

Lj0g3v0054459.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054459.2 Non Chatacterized Hit- tr|I3S0X9|I3S0X9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.46,0,HIT-like,HIT-like domain; HIT_2,Histidine triad (HIT)
protein; no description,HIT-like domain; coile,CUFF.2414.2
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:235...   155   7e-39
AT5G58240.2 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:235...   155   9e-39

>AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD |
           chr5:23558349-23559313 REVERSE LENGTH=180
          Length = 180

 Score =  155 bits (392), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 87/129 (67%)

Query: 1   MVNLRPLLPGNVLICPKREVKRFVDLTAEETSDLWLTAQKVGRQLESYHKASSLTLAIQD 60
           MVNLRPLLP +VL+CP+R V RF DLTA+ETSDLWLTAQKVG +LE++H ASSLTLAIQD
Sbjct: 50  MVNLRPLLPAHVLVCPRRLVPRFTDLTADETSDLWLTAQKVGSKLETFHNASSLTLAIQD 109

Query: 61  GPQAGQTXXXXXXXXXXRRGGDFENNDEIYDAMXXXXXXXXXXXXXXXXXXXXTLGEMAQ 120
           GPQAGQT          R+GGDFE NDEIYDA+                    ++ EMA 
Sbjct: 110 GPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEKELKQKLDLDKDRVDRSIQEMAD 169

Query: 121 EADDYRKLF 129
           EA  YR LF
Sbjct: 170 EASQYRSLF 178


>AT5G58240.2 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD |
           chr5:23558349-23559171 REVERSE LENGTH=160
          Length = 160

 Score =  155 bits (391), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 87/129 (67%)

Query: 1   MVNLRPLLPGNVLICPKREVKRFVDLTAEETSDLWLTAQKVGRQLESYHKASSLTLAIQD 60
           MVNLRPLLP +VL+CP+R V RF DLTA+ETSDLWLTAQKVG +LE++H ASSLTLAIQD
Sbjct: 30  MVNLRPLLPAHVLVCPRRLVPRFTDLTADETSDLWLTAQKVGSKLETFHNASSLTLAIQD 89

Query: 61  GPQAGQTXXXXXXXXXXRRGGDFENNDEIYDAMXXXXXXXXXXXXXXXXXXXXTLGEMAQ 120
           GPQAGQT          R+GGDFE NDEIYDA+                    ++ EMA 
Sbjct: 90  GPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEKELKQKLDLDKDRVDRSIQEMAD 149

Query: 121 EADDYRKLF 129
           EA  YR LF
Sbjct: 150 EASQYRSLF 158