Miyakogusa Predicted Gene
- Lj0g3v0054419.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0054419.1 Non Chatacterized Hit- tr|I1MZM2|I1MZM2_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,87.63,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; HELICASE_CTER,Helicase,
C-termina,NODE_88001_length_918_cov_7.385621.path1.1
(309 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2... 270 7e-73
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 255 2e-68
AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:1... 247 9e-66
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (... 245 3e-65
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase... 239 1e-63
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 225 3e-59
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 212 3e-55
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 167 8e-42
AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:979424... 147 7e-36
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 72 6e-13
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 71 9e-13
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 71 9e-13
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 71 1e-12
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 71 1e-12
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 70 2e-12
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 70 2e-12
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 70 3e-12
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 67 1e-11
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 67 1e-11
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 67 2e-11
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 67 2e-11
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 67 2e-11
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 66 3e-11
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 63 2e-10
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 62 5e-10
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 62 6e-10
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 61 1e-09
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 60 2e-09
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 57 2e-08
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 55 7e-08
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 55 7e-08
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 55 8e-08
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 55 9e-08
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 55 9e-08
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 55 9e-08
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 54 1e-07
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 54 1e-07
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 54 2e-07
AT3G02060.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 53 3e-07
AT3G02060.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 53 3e-07
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 3e-07
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 3e-07
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 3e-07
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 53 3e-07
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 53 3e-07
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 52 5e-07
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 52 5e-07
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 52 6e-07
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 52 7e-07
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 51 8e-07
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 51 1e-06
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 51 1e-06
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 50 2e-06
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 50 2e-06
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 50 2e-06
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 50 2e-06
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 49 3e-06
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 49 4e-06
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 49 4e-06
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 49 5e-06
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 48 7e-06
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 48 8e-06
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 48 8e-06
>AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 |
chr1:11232422-11237412 FORWARD LENGTH=705
Length = 705
Score = 270 bits (691), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/315 (46%), Positives = 202/315 (64%), Gaps = 11/315 (3%)
Query: 1 MATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSA---QKDFT 57
MA G GKSLCYQ+P ++ T +VVSPL+SL+QDQVM L GI A L S + +
Sbjct: 111 MAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKF 170
Query: 58 VQTKAEHGQFD--ILFMTPEKACTISTSFWSNLLK---AG-ISLFAVDEAHCISEWGHDF 111
V E G+ D IL++TPEK + S F S L K AG +SL ++DEAHC S+WGHDF
Sbjct: 171 VYKALEKGEDDLKILYVTPEKV-SKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDF 229
Query: 112 RVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVK 171
R +YKNL L++ +VP V LTATAT+KV+ D+I+ L + V S +R NLFY V+
Sbjct: 230 RPDYKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVR 289
Query: 172 PFSR-GQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNG 230
S G+ +DE+ I + + S I+YC + K+ EQI+ L E GI A YH M+
Sbjct: 290 EKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDA 349
Query: 231 KSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGI 290
RE+ H + ++++Q++V T+AFGMGI+KP++R VIH+ KS+E+YYQESGR GRDG+
Sbjct: 350 NMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGL 409
Query: 291 PSVCWLYYTRGDFAK 305
PS C L++ D +
Sbjct: 410 PSECILFFRSADVPR 424
>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936233-16940172 FORWARD
LENGTH=713
Length = 713
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 188/321 (58%), Gaps = 21/321 (6%)
Query: 1 MATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVQT 60
M TG GKS+CYQ+P L +VVSPLI+LM++QVMALKE+GI AEYL S Q V+
Sbjct: 58 MPTGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATH-VKN 116
Query: 61 KAEHGQFD-------ILFMTPEKACTISTSFWSNLLKAG----ISLFAVDEAHCISEWGH 109
K H D +L++TPE T F L K ++L A+DEAHCIS WGH
Sbjct: 117 KI-HEDLDSGKPSVRLLYVTPELIAT--KGFMLKLRKLHSRGLLNLIAIDEAHCISSWGH 173
Query: 110 DFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYG 169
DFR Y+ L LR L +VP + LTATA KV+ D+I SL + NP VL SF+R N+FY
Sbjct: 174 DFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYE 233
Query: 170 VKPFSRGQSFIDELVREISKEVDS--GTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQ 227
V R + +D ++ + S IIYC + +S L+ GI + YH
Sbjct: 234 V----RYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAG 289
Query: 228 MNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGR 287
+N K R ++ + QI+VAT+AFGMGIDK ++R V H+ PKS+ES+YQESGR GR
Sbjct: 290 LNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGR 349
Query: 288 DGIPSVCWLYYTRGDFAKGEF 308
D +PS LYY D K E+
Sbjct: 350 DQLPSRSVLYYGVDDRKKMEY 370
>AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 |
chr1:11233174-11237412 FORWARD LENGTH=580
Length = 580
Score = 247 bits (630), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 188/295 (63%), Gaps = 11/295 (3%)
Query: 21 TGIVVSPLISLMQDQVMALKERGIKAEYLGSA---QKDFTVQTKAEHGQFD--ILFMTPE 75
T +VVSPL+SL+QDQVM L GI A L S + + V E G+ D IL++TPE
Sbjct: 6 TTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPE 65
Query: 76 KACTISTSFWSNLLK---AG-ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFV 131
K + S F S L K AG +SL ++DEAHC S+WGHDFR +YKNL L++ +VP V
Sbjct: 66 KV-SKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMV 124
Query: 132 GLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSR-GQSFIDELVREISKE 190
LTATAT+KV+ D+I+ L + V S +R NLFY V+ S G+ +DE+ I +
Sbjct: 125 ALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRES 184
Query: 191 VDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 250
+ S I+YC + K+ EQI+ L E GI A YH M+ RE+ H + ++++Q++V
Sbjct: 185 YSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVG 244
Query: 251 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAK 305
T+AFGMGI+KP++R VIH+ KS+E+YYQESGR GRDG+PS C L++ D +
Sbjct: 245 TVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPR 299
>AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Length = 1188
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 191/315 (60%), Gaps = 15/315 (4%)
Query: 1 MATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVQT 60
M TG GKSL YQ+P L+ +V+SPL+SL+QDQ+M L + I A L SA ++ Q
Sbjct: 475 MPTGGGKSLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPAASL-SAGMEWAEQL 533
Query: 61 K------AEHGQFDILFMTPEKACTIST--SFWSNLLKAGI-SLFAVDEAHCISEWGHDF 111
K +EH ++ +L++TPEK + NL G+ + F +DEAHC+S+WGHDF
Sbjct: 534 KIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 593
Query: 112 RVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVK 171
R +Y++L L+ +P + LTATAT V+ D++++L + N V SF+R NL+Y V
Sbjct: 594 RPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 653
Query: 172 PFSRG-QSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNG 230
P ++ ID+ + KE IIYC + D E++S+ L E G KA YHG M
Sbjct: 654 PKTKKCLEDIDKFI----KENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEP 709
Query: 231 KSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGI 290
+ R + +DE+ I+ AT+AFGMGI+KP++R VIH+ PKSIE Y+QE GR GRDG
Sbjct: 710 EQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 769
Query: 291 PSVCWLYYTRGDFAK 305
S C LYY GD+ +
Sbjct: 770 RSSCVLYYGYGDYIR 784
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22431093-22438302 REVERSE LENGTH=1150
Length = 1150
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 191/315 (60%), Gaps = 15/315 (4%)
Query: 1 MATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSA-----QKD 55
M TG GKSL YQ+P L+ +V+SPL+SL+QDQ+M L + I A L + Q +
Sbjct: 491 MPTGGGKSLTYQLPALLCAGITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLE 550
Query: 56 FTVQTKAEHGQFDILFMTPEKACTISTSFWSNL----LKAGISLFAVDEAHCISEWGHDF 111
+ +E ++ +L++TPEK S S +L ++ ++ F +DEAHC+S+WGHDF
Sbjct: 551 ILQELSSEKSKYKLLYVTPEKVAK-SESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDF 609
Query: 112 RVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVK 171
R +Y+ L L+ +P + LTATAT V+ D++++L + N V SF+R NL+Y V
Sbjct: 610 RPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 669
Query: 172 P-FSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNG 230
P ++ ID+ +RE D IIYC + D E+++++L G KA YHG M+
Sbjct: 670 PKTNKCLEDIDKFIRE--NHFDE--CGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDP 725
Query: 231 KSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGI 290
R + + +DE+ I+ AT+AFGMGI+KP++R VIH+ PKSIE Y+QE GR GRDG
Sbjct: 726 GKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 785
Query: 291 PSVCWLYYTRGDFAK 305
S C LYY+ D+ +
Sbjct: 786 RSSCVLYYSYTDYIR 800
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 189/321 (58%), Gaps = 25/321 (7%)
Query: 1 MATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKER-GIKAEYLGSAQKDFTV- 58
M TG GKSLCYQ+P + IV+SPL+SL+QDQ++AL + GI A +L S Q
Sbjct: 228 MPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQDQIVALNLKFGIPATFLNSQQTSSQAA 287
Query: 59 ----QTKAEHGQFDILFMTPEKACTISTSFWSNLL----KAGISLFAVDEAHCISEWGHD 110
+ + ++ +L++TPEK S+SF L K ++ F VDEAHC+S+WGHD
Sbjct: 288 AVLQELRRDNPSCKLLYVTPEKIAG-SSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHD 346
Query: 111 FRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGV 170
FR +Y+ L L+ VP + LTATATE V D++KSL++ VL SFDR NL Y V
Sbjct: 347 FRPDYRELGCLKQNFPRVPVMALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEV 406
Query: 171 -----KPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE-AGIKAGMY 224
+P + Q EL+R+ K+ S I+YC + + ++K L E +K Y
Sbjct: 407 IVKTKEPLKQLQ----ELLRDRFKD----QSGIVYCLSKSECVDVAKFLNEKCKVKTVYY 458
Query: 225 HGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGR 284
H + K R + R + EV+I+ ATIAFGMGIDK ++R VIH K++ESYYQESGR
Sbjct: 459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGR 518
Query: 285 CGRDGIPSVCWLYYTRGDFAK 305
GRDG+ + C Y + DF++
Sbjct: 519 AGRDGLQAQCICLYQKKDFSR 539
>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936788-16940172 FORWARD
LENGTH=620
Length = 620
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 161/285 (56%), Gaps = 21/285 (7%)
Query: 37 MALKERGIKAEYLGSAQKDFTVQTKAEHGQFD-------ILFMTPEKACTISTSFWSNLL 89
MALKE+GI AEYL S Q V+ K H D +L++TPE T F L
Sbjct: 1 MALKEKGIAAEYLSSTQATH-VKNKI-HEDLDSGKPSVRLLYVTPELIAT--KGFMLKLR 56
Query: 90 KAG----ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDI 145
K ++L A+DEAHCIS WGHDFR Y+ L LR L +VP + LTATA KV+ D+
Sbjct: 57 KLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDV 116
Query: 146 IKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDS--GTSTIIYCTT 203
I SL + NP VL SF+R N+FY V R + +D ++ + S IIYC
Sbjct: 117 IDSLNLRNPLVLKSSFNRPNIFYEV----RYKDLLDNAYTDLGNLLKSCGNICAIIYCLE 172
Query: 204 IKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNI 263
+ +S L+ GI + YH +N K R ++ + QI+VAT+AFGMGIDK ++
Sbjct: 173 RTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDV 232
Query: 264 RKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEF 308
R V H+ PKS+ES+YQESGR GRD +PS LYY D K E+
Sbjct: 233 RMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEY 277
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 167/311 (53%), Gaps = 10/311 (3%)
Query: 1 MATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQK-DFTVQ 59
+ TG+GKSLCYQ+P +++ +VVSPL+SLM DQ+ L IK L S+Q+ + +
Sbjct: 291 LPTGAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATE 349
Query: 60 T--KAEHGQFDILFMTPEKACTISTSFWSNL-LKAGISLFAVDEAHCISEWGHDFRVEYK 116
T K + G +LF++PE+ ++ F S + +SL VDEAHC+SEW H+FR Y
Sbjct: 350 TLRKLKEGIIKVLFVSPER--LLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYM 407
Query: 117 NLDK--LRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFS 174
L L S L + +TATAT ++ SL++ + ++ S R N V S
Sbjct: 408 RLKASMLFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVS-LS 466
Query: 175 RGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSRE 234
D L+ S S I+YC + + ISK L + I A YH + K R
Sbjct: 467 GANRMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRV 526
Query: 235 ESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVC 294
F ++++++VAT+AFGMG+DK ++ VIH+ P S+E Y QE GR GRDG S C
Sbjct: 527 RIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYC 586
Query: 295 WLYYTRGDFAK 305
L+Y + K
Sbjct: 587 HLFYDNDTYLK 597
>AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM |
chr5:9794244-9798637 REVERSE LENGTH=858
Length = 858
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)
Query: 2 ATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVQTK 61
ATGSGKSLC+Q+P L+ K +V+SPLISLM DQ + L + A +LGS Q D ++ K
Sbjct: 191 ATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEK 250
Query: 62 AEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKL 121
A G + I+++ PE + GI+LFA+DEAHC+S+WGHDFR Y+ L L
Sbjct: 251 AMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVL 310
Query: 122 RSVLV---------EVPFVGLTATATEKVRFDIIKSLKMNNPY-VLVGSFDRANLFYGVK 171
R +VP + LTATAT V+ DI++SL ++ +++ SF R NL + VK
Sbjct: 311 RENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVK 370
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 73/109 (66%)
Query: 189 KEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIM 248
K+ D TIIY T K+ I+K L G+KA Y+ + K + H+ F +++Q++
Sbjct: 492 KQKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVV 551
Query: 249 VATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLY 297
VATIAFGMGIDK N+RK+IHYG +S+E+YYQE+GR GRDG + C LY
Sbjct: 552 VATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 147/326 (45%), Gaps = 45/326 (13%)
Query: 3 TGSGKSLCYQVPPLV----------VKKTGIVVSPLISL-MQDQVMALK---ERGIKAEY 48
TGSGK+L Y +P + + T +V+SP L Q QV ALK I
Sbjct: 275 TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 334
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ + E G DI+ TP + I +L + +S +DEA + +
Sbjct: 335 LYGGAPKGPQLK-EIERG-VDIVVATPGRLNDILEMKRISLHQ--VSYLVLDEADRMLDM 390
Query: 108 GHDFRVEYKNLDKLRSVLVEVPF----VGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ EVP + TAT ++VR I L +N V +G+ D
Sbjct: 391 GFE--------PQIRKIVNEVPTKRQTLMYTATWPKEVR-KIAADLLVNPAQVNIGNVDE 441
Query: 164 --AN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
AN + P + S +++++R + G+ II+C+T + +Q++++LT
Sbjct: 442 LVANKSITQTIEVLAPMEK-HSRLEQILRS----QEPGSKIIIFCSTKRMCDQLARNLTR 496
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
A HG + R++ F ++VAT G+D +IR V++Y P +E
Sbjct: 497 T-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555
Query: 277 SYYQESGRCGRDGIPSVCWLYYTRGD 302
Y GR GR G + + ++ D
Sbjct: 556 DYVHRIGRTGRAGATGLAYTFFGDQD 581
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 147/326 (45%), Gaps = 45/326 (13%)
Query: 3 TGSGKSLCYQVPPLV----------VKKTGIVVSPLISL-MQDQVMALK---ERGIKAEY 48
TGSGK+L Y +P + + T +V+SP L Q QV ALK I
Sbjct: 207 TGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCAC 266
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ + E G DI+ TP + I +L + +S +DEA + +
Sbjct: 267 LYGGAPKGPQLK-EIERG-VDIVVATPGRLNDILEMKRISLHQ--VSYLVLDEADRMLDM 322
Query: 108 GHDFRVEYKNLDKLRSVLVEVPF----VGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ EVP + TAT ++VR I L +N V +G+ D
Sbjct: 323 GFE--------PQIRKIVNEVPTKRQTLMYTATWPKEVR-KIAADLLVNPAQVNIGNVDE 373
Query: 164 --AN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
AN + P + S +++++R + G+ II+C+T + +Q++++LT
Sbjct: 374 LVANKSITQTIEVLAPMEK-HSRLEQILRS----QEPGSKIIIFCSTKRMCDQLARNLTR 428
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
A HG + R++ F ++VAT G+D +IR V++Y P +E
Sbjct: 429 T-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 487
Query: 277 SYYQESGRCGRDGIPSVCWLYYTRGD 302
Y GR GR G + + ++ D
Sbjct: 488 DYVHRIGRTGRAGATGLAYTFFGDQD 513
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 51/328 (15%)
Query: 3 TGSGKSLCYQVPPL-----------VVKKTG-----IVVSPLISLMQDQVMALKERGIKA 46
TG+GK+L + +P + +++G +V++P L + +KE A
Sbjct: 55 TGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE---SA 111
Query: 47 EYLGS----AQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAG-ISLFAVDEA 101
YL + +T+Q A D++ TP + + LK G + +DEA
Sbjct: 112 PYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDL---IEGRSLKLGEVEYLVLDEA 168
Query: 102 HCISEWGHDFRVE--YKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYV--L 157
+ G + VE +NL R ++ F T +K + ++NP L
Sbjct: 169 DQMLAVGFEEAVESILENLPTKRQSML---FSATMPTWVKK-----LARKYLDNPLNIDL 220
Query: 158 VGSFDRANLFYGVKPF------SRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQIS 211
VG D L G+K + + ++ + +L+ +K G TI++ T +D +++S
Sbjct: 221 VGDQDE-KLAEGIKLYAIATTSTSKRTILSDLITVYAK----GGKTIVFTQTKRDADEVS 275
Query: 212 KSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGC 271
+L+ + I HG ++ RE + F + + ++VAT G+D PN+ VIHY
Sbjct: 276 LALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYEL 334
Query: 272 PKSIESYYQESGRCGRDGIPSVCWLYYT 299
P E++ SGR GR G L +T
Sbjct: 335 PNDPETFVHRSGRTGRAGKEGSAILMHT 362
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 51/328 (15%)
Query: 3 TGSGKSLCYQVPPL-----------VVKKTG-----IVVSPLISLMQDQVMALKERGIKA 46
TG+GK+L + +P + +++G +V++P L + +KE A
Sbjct: 148 TGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE---SA 204
Query: 47 EYLGS----AQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAG-ISLFAVDEA 101
YL + +T+Q A D++ TP + + LK G + +DEA
Sbjct: 205 PYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDL---IEGRSLKLGEVEYLVLDEA 261
Query: 102 HCISEWGHDFRVE--YKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYV--L 157
+ G + VE +NL R ++ F T +K + ++NP L
Sbjct: 262 DQMLAVGFEEAVESILENLPTKRQSML---FSATMPTWVKK-----LARKYLDNPLNIDL 313
Query: 158 VGSFDRANLFYGVKPF------SRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQIS 211
VG D L G+K + + ++ + +L+ +K G TI++ T +D +++S
Sbjct: 314 VGDQDE-KLAEGIKLYAIATTSTSKRTILSDLITVYAK----GGKTIVFTQTKRDADEVS 368
Query: 212 KSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGC 271
+L+ + I HG ++ RE + F + + ++VAT G+D PN+ VIHY
Sbjct: 369 LALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYEL 427
Query: 272 PKSIESYYQESGRCGRDGIPSVCWLYYT 299
P E++ SGR GR G L +T
Sbjct: 428 PNDPETFVHRSGRTGRAGKEGSAILMHT 455
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 51/328 (15%)
Query: 3 TGSGKSLCYQVPPL-----------VVKKTG-----IVVSPLISLMQDQVMALKERGIKA 46
TG+GK+L + +P + +++G +V++P L + +KE A
Sbjct: 148 TGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE---SA 204
Query: 47 EYLGS----AQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAG-ISLFAVDEA 101
YL + +T+Q A D++ TP + + LK G + +DEA
Sbjct: 205 PYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDL---IEGRSLKLGEVEYLVLDEA 261
Query: 102 HCISEWGHDFRVE--YKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYV--L 157
+ G + VE +NL R ++ F T +K + ++NP L
Sbjct: 262 DQMLAVGFEEAVESILENLPTKRQSML---FSATMPTWVKK-----LARKYLDNPLNIDL 313
Query: 158 VGSFDRANLFYGVKPF------SRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQIS 211
VG D L G+K + + ++ + +L+ +K G TI++ T +D +++S
Sbjct: 314 VGDQDE-KLAEGIKLYAIATTSTSKRTILSDLITVYAK----GGKTIVFTQTKRDADEVS 368
Query: 212 KSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGC 271
+L+ + I HG ++ RE + F + + ++VAT G+D PN+ VIHY
Sbjct: 369 LALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYEL 427
Query: 272 PKSIESYYQESGRCGRDGIPSVCWLYYT 299
P E++ SGR GR G L +T
Sbjct: 428 PNDPETFVHRSGRTGRAGKEGSAILMHT 455
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 173 FSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKS 232
F R Q +DEL + I++ T K+ + I+K+L +AG + HG + +
Sbjct: 564 FFRLQKLLDEL---------GEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQ 614
Query: 233 REESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPS 292
RE S F ++VAT G GID P++ VI+Y PK IE Y GR GR G
Sbjct: 615 REISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG 674
Query: 293 VCWLYYTRGD 302
V + T D
Sbjct: 675 VATSFLTLHD 684
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 143/327 (43%), Gaps = 38/327 (11%)
Query: 3 TGSGKSLCYQVP--------PLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQK 54
TGSGK+L Y +P P++ G +V L + V +E A GS+ K
Sbjct: 145 TGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQE----ASKFGSSSK 200
Query: 55 DFTV----------QTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCI 104
T Q + +I+ TP + + S +NL + ++ +DEA +
Sbjct: 201 IKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRR--VTYLVLDEADRM 258
Query: 105 SEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPY-VLVGSFD- 162
+ G D ++ K + +R L +AT + + + NPY V++GS D
Sbjct: 259 LDMGFDPQIR-KIVSHIRPDRQT-----LYWSATWPKEVEQLSKKFLYNPYKVIIGSSDL 312
Query: 163 RAN--LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIK 220
+AN + V S Q + ++LV+ + +D G+ +++ T K +QI++ L G
Sbjct: 313 KANRAIRQIVDVISESQKY-NKLVKLLEDIMD-GSRILVFLDTKKGCDQITRQLRMDGWP 370
Query: 221 AGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQ 280
A HG + R+ F + IM AT G+D +++ VI+Y P S+E Y
Sbjct: 371 ALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 430
Query: 281 ESGRCGRDGIPSVCWLYYTRGD--FAK 305
GR GR G + ++T + FAK
Sbjct: 431 RIGRTGRAGAKGTAYTFFTVANARFAK 457
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 78/322 (24%), Positives = 144/322 (44%), Gaps = 35/322 (10%)
Query: 3 TGSGKSLCYQVPPLVVKK----------TGIVVSP---LISLMQDQVMAL-KERGIKAEY 48
TGSGK+L Y +P ++ + T ++++P L + +QD+ + + I
Sbjct: 481 TGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTC 540
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ + E G DI+ TP + I + + +SL +DEA + +
Sbjct: 541 LYGGAPKGPQLK-ELERGA-DIVVATPGRLNDILEMKMIDFQQ--VSLLVLDEADRMLDM 596
Query: 108 GHDFRVEYKNLDKLRSVLVEVP----FVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ E+P + TAT ++VR I L +N V +G D
Sbjct: 597 GFE--------PQIRKIVNEIPPRRQTLMYTATWPKEVR-KIASDLLVNPVQVNIGRVDE 647
Query: 164 ANLFYGVKPFSR--GQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKA 221
+ + Q + + +I + + G+ II+C+T + + +++S+ A
Sbjct: 648 LAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGA 706
Query: 222 GMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQE 281
+ HG R+ F + +++AT G+D +IR VI+Y P +E Y
Sbjct: 707 VVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHR 766
Query: 282 SGRCGRDGIPSVCWLYYTRGDF 303
GR GR G V + ++T D+
Sbjct: 767 IGRTGRAGATGVAFTFFTEQDW 788
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 45/324 (13%)
Query: 3 TGSGKSLCYQVPPL--VVK---KTGIVVSPL-ISLMQDQVMALKERGIKAEYLGSAQKDF 56
TG+GK+L + +P + ++K K G +PL + L + +A R ++ E+ SA
Sbjct: 150 TGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELA---RQVEKEFRESAPSLD 206
Query: 57 TV----------QTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISE 106
T+ Q + D+ TP + + NL + + +DEA + +
Sbjct: 207 TICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSE--VQFVVLDEADQMLQ 264
Query: 107 WG--HDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYV--LVGSFD 162
G D + + L + R ++ +AT +R K L NNP LVG D
Sbjct: 265 VGFAEDVEIILEKLPEKRQSMM------FSATMPSWIRSLTKKYL--NNPLTVDLVGDSD 316
Query: 163 RANLFYGVKPFS------RGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
+ L G+ +S S I LV E +K G I++ T +D +++S +L
Sbjct: 317 Q-KLADGITTYSIIADSYGRASIIGPLVTEHAK----GGKCIVFTQTKRDADRLSYALAR 371
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
+ K HG ++ RE + F I+VAT G+D PN+ +IHY P + E
Sbjct: 372 S-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTE 430
Query: 277 SYYQESGRCGRDGIPSVCWLYYTR 300
++ +GR GR G L Y++
Sbjct: 431 TFVHRTGRTGRAGKKGSAILIYSQ 454
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 45/322 (13%)
Query: 3 TGSGKSLCYQVPPLV----------VKKTGIVVSP---LISLMQDQVMAL-KERGIKAEY 48
TGSGK+L Y +P + + T +V+SP L + +Q++ + + I
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ E G DI+ TP + I +L + IS +DEA + +
Sbjct: 264 LYGGAPKGPQLR-DLERGA-DIVVATPGRLNDILEMRRISLRQ--ISYLVLDEADRMLDM 319
Query: 108 GHDFRVEYKNLDKLRSVLVEVPF----VGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ E+P + TAT + VR I L +N V +G+ D
Sbjct: 320 GFE--------PQIRKIVKEIPTKRQTLMYTATWPKGVR-KIAADLLVNPAQVNIGNVDE 370
Query: 164 --ANLFYG-----VKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
AN V P + Q +++++R S+E G+ II+C+T + +Q++++LT
Sbjct: 371 LVANKSITQHIEVVAPMEK-QRRLEQILR--SQE--PGSKVIIFCSTKRMCDQLTRNLTR 425
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
A HG + R+ F ++VAT G+D +IR V++Y P +E
Sbjct: 426 Q-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 277 SYYQESGRCGRDGIPSVCWLYY 298
Y GR GR G + ++
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 45/322 (13%)
Query: 3 TGSGKSLCYQVPPLV----------VKKTGIVVSP---LISLMQDQVMAL-KERGIKAEY 48
TGSGK+L Y +P + + T +V+SP L + +Q++ + + I
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ E G DI+ TP + I +L + IS +DEA + +
Sbjct: 264 LYGGAPKGPQLR-DLERGA-DIVVATPGRLNDILEMRRISLRQ--ISYLVLDEADRMLDM 319
Query: 108 GHDFRVEYKNLDKLRSVLVEVPF----VGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ E+P + TAT + VR I L +N V +G+ D
Sbjct: 320 GFE--------PQIRKIVKEIPTKRQTLMYTATWPKGVR-KIAADLLVNPAQVNIGNVDE 370
Query: 164 --ANLFYG-----VKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
AN V P + Q +++++R S+E G+ II+C+T + +Q++++LT
Sbjct: 371 LVANKSITQHIEVVAPMEK-QRRLEQILR--SQE--PGSKVIIFCSTKRMCDQLTRNLTR 425
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
A HG + R+ F ++VAT G+D +IR V++Y P +E
Sbjct: 426 Q-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 277 SYYQESGRCGRDGIPSVCWLYY 298
Y GR GR G + ++
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 45/322 (13%)
Query: 3 TGSGKSLCYQVPPLV----------VKKTGIVVSP---LISLMQDQVMAL-KERGIKAEY 48
TGSGK+L Y +P + + T +V+SP L + +Q++ + + I
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ E G DI+ TP + I +L + IS +DEA + +
Sbjct: 264 LYGGAPKGPQLR-DLERGA-DIVVATPGRLNDILEMRRISLRQ--ISYLVLDEADRMLDM 319
Query: 108 GHDFRVEYKNLDKLRSVLVEVPF----VGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ E+P + TAT + VR I L +N V +G+ D
Sbjct: 320 GFE--------PQIRKIVKEIPTKRQTLMYTATWPKGVR-KIAADLLVNPAQVNIGNVDE 370
Query: 164 --ANLFYG-----VKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
AN V P + Q +++++R S+E G+ II+C+T + +Q++++LT
Sbjct: 371 LVANKSITQHIEVVAPMEK-QRRLEQILR--SQE--PGSKVIIFCSTKRMCDQLTRNLTR 425
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
A HG + R+ F ++VAT G+D +IR V++Y P +E
Sbjct: 426 Q-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 277 SYYQESGRCGRDGIPSVCWLYY 298
Y GR GR G + ++
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 45/322 (13%)
Query: 3 TGSGKSLCYQVPPLV----------VKKTGIVVSP---LISLMQDQVMAL-KERGIKAEY 48
TGSGK+L Y +P + + T +V+SP L + +Q++ + + I
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 49 L-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEW 107
L G A K ++ E G DI+ TP + I +L + IS +DEA + +
Sbjct: 264 LYGGAPKGPQLR-DLERGA-DIVVATPGRLNDILEMRRISLRQ--ISYLVLDEADRMLDM 319
Query: 108 GHDFRVEYKNLDKLRSVLVEVPF----VGLTATATEKVRFDIIKSLKMNNPYVLVGSFDR 163
G + ++R ++ E+P + TAT + VR I L +N V +G+ D
Sbjct: 320 GFE--------PQIRKIVKEIPTKRQTLMYTATWPKGVR-KIAADLLVNPAQVNIGNVDE 370
Query: 164 --ANLFYG-----VKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTE 216
AN V P + Q +++++R S+E G+ II+C+T + +Q++++LT
Sbjct: 371 LVANKSITQHIEVVAPMEK-QRRLEQILR--SQE--PGSKVIIFCSTKRMCDQLTRNLTR 425
Query: 217 AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
A HG + R+ F ++VAT G+D +IR V++Y P +E
Sbjct: 426 Q-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 277 SYYQESGRCGRDGIPSVCWLYY 298
Y GR GR G + ++
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFF 506
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 138/327 (42%), Gaps = 45/327 (13%)
Query: 3 TGSGKSLCYQVPPLV---------------VKKTGIVVSPLISLMQDQVMALKERG---- 43
TGSGK+L + +P ++ V T +V+SP L L+E G
Sbjct: 160 TGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCG 219
Query: 44 IKA--EYLGSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLK-AGISLFAVDE 100
+K+ Y GS++ Q A DI+ TP + + SN+L+ + +S +DE
Sbjct: 220 LKSICVYGGSSKGP---QISAIRSGVDIVIGTPGR---LRDLIESNVLRLSDVSFVVLDE 273
Query: 101 AHCISEWGHDFRVEY--KNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLV 158
A + + G + V + N +K+R +++ +AT V + + N V++
Sbjct: 274 ADRMLDMGFEEPVRFILSNTNKVRQMVM------FSATWPLDVHKLAQEFMDPNPIKVII 327
Query: 159 GSFDRA------NLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISK 212
GS D A + + +R Q I L+ + K +++ + E++ +
Sbjct: 328 GSVDLAANHDVMQIIEVLDERARDQRLI-ALLEKYHK--SQKNRVLVFALYKVEAERLER 384
Query: 213 SLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCP 272
L + G KA HG R S LF ++VAT G+D P++ VI+Y P
Sbjct: 385 FLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFP 444
Query: 273 KSIESYYQESGRCGRDGIPSVCWLYYT 299
+ E Y GR GR G V ++T
Sbjct: 445 LTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 146 IKSLK---MNNPYV--LVGSFDR----ANLFYGVKPFSRGQ-SFIDELVREISKEVDSGT 195
I+SL +NNP LVG D+ Y + S G+ S I LV+E K G
Sbjct: 307 IRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGK----GG 362
Query: 196 STIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFG 255
I++ T +D ++++ L ++ K HG ++ RE + F I+VAT
Sbjct: 363 KCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAA 421
Query: 256 MGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
G+D PN+ VIHY P + E++ +GR GR G
Sbjct: 422 RGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAG 455
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+ II+ T + ++ AG+KA HG + R +S LF + EV ++AT
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
G+D ++ VI+Y CP+ I+SY GR R G + T D
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD 520
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 18/203 (8%)
Query: 95 LFAVDEAHCISEWG--HDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMN 152
L +DEA + + G D R + + R L+ +AT + I + +
Sbjct: 256 LLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLL--------FSATMPAKIQIFATSALV 307
Query: 153 NPY-VLVGSFDRANL-FYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQI 210
P V VG ANL + + ++ I L+ + K + +I+C DV+ I
Sbjct: 308 KPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK---TTPPVLIFCENKADVDDI 364
Query: 211 SKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYG 270
+ L G++A HG + + R+ + LF + ++VAT G+D P+I+ VI+Y
Sbjct: 365 HEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYD 424
Query: 271 CPKSIESYYQ---ESGRCGRDGI 290
P IE+Y +GRCG+ GI
Sbjct: 425 MPGEIENYVHRIGRTGRCGKTGI 447
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%)
Query: 197 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 256
TI++CT++ D+ IS L G+ +M ++R +S F E I++AT
Sbjct: 505 TIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVAR 564
Query: 257 GIDKPNIRKVIHYGCPKSIESYYQESGRCGR 287
GID N+R +IHY P S E Y GR R
Sbjct: 565 GIDIKNVRTIIHYKLPHSAEVYVHRCGRTAR 595
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 193 SGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATI 252
+ +I+C DV+ I + L G++A HG + + RE + F + ++VAT
Sbjct: 396 TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATD 455
Query: 253 AFGMGIDKPNIRKVIHYGCPKSIESYYQ---ESGRCGRDGI 290
G+D P+I+ VI+Y P IE+Y +GRCG+ GI
Sbjct: 456 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGI 496
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 137/319 (42%), Gaps = 36/319 (11%)
Query: 3 TGSGKSLCYQVPPLV----VKKTGIVVSPLISLM---QDQVMALKER--------GIKAE 47
TGSGK+L Y +P LV + G P++ ++ ++ + ++E G+++
Sbjct: 211 TGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRST 270
Query: 48 YL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISE 106
+ G A K Q + +I+ TP + + +NL + ++ +DEA + +
Sbjct: 271 CIYGGAPKG--PQIRDLRRGVEIVIATPGRLIDMLECQHTNLKR--VTYLVLDEADRMLD 326
Query: 107 WGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPY-VLVGSFD--- 162
G + ++ K + ++R L +AT + + + +PY ++GS D
Sbjct: 327 MGFEPQIR-KIVSQIRPDRQT-----LLWSATWPREVETLARQFLRDPYKAIIGSTDLKA 380
Query: 163 --RANLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIK 220
N + P + + L+ K++ G+ +I+ T + +Q+++ L G
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLL----KQLMDGSKILIFVETKRGCDQVTRQLRMDGWP 436
Query: 221 AGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQ 280
A HG R+ F IM AT G+D +I+ V++Y P ++E Y
Sbjct: 437 ALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIH 496
Query: 281 ESGRCGRDGIPSVCWLYYT 299
GR GR G + + ++T
Sbjct: 497 RIGRTGRAGAKGMAFTFFT 515
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+II+C ++ VE ++K +TE G H +M R F + +V T F
Sbjct: 362 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
GID + VI++ P++ ESY GR GR G
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+II+C ++ VE ++K +TE G H +M R F + +V T F
Sbjct: 362 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
GID + VI++ P++ ESY GR GR G
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 16/240 (6%)
Query: 59 QTKAEHGQFDILFMTPE--KACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYK 116
Q + + IL TP K +T ++ LK G+ + +DEA + + G FR + +
Sbjct: 441 QKRMQTNPCQILVATPGRLKDHIENTPGFATRLK-GVKVLVLDEADHLLDMG--FRKDIE 497
Query: 117 NLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYV------LVGSFDRANLFYGV 170
+ + +V E +AT E+VR + +L+ ++ +V + + + + +
Sbjct: 498 RI--ISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMI 555
Query: 171 KPFSRGQSFIDELVRE-ISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMN 229
R S + L+RE I VD I++CTT + ++ L E + H +
Sbjct: 556 ASLDRHFSLLYTLLREHIMGNVD--YKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKP 613
Query: 230 GKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
R F + + I+V + G+D P++ V+ G PK E Y GR GR G
Sbjct: 614 QSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKG 673
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+II+C ++ VE ++K +TE G H +M R F + +V T F
Sbjct: 369 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 428
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
GID + VI++ PK+ E+Y GR GR G
Sbjct: 429 TRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+II+C ++ VE ++K +TE G H +M R F + +V T F
Sbjct: 369 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 428
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
GID + VI++ PK+ E+Y GR GR G
Sbjct: 429 TRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+II+C ++ VE ++K +TE G H +M R F + +V T F
Sbjct: 392 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLF 451
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
GID + VI++ P++ ESY GR GR G
Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 486
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 197 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 256
T+++ T K + + L G A HG + + RE + R F I+VAT
Sbjct: 408 TLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAAR 467
Query: 257 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 299
G+D P++ V+++ P I+ Y GR GR G + ++
Sbjct: 468 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN 510
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 197 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 256
T+++ T + + + L G A HG + RE + + F I+VAT
Sbjct: 421 TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAAR 480
Query: 257 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
G+D P++ V+++ P I+ Y GR GR G + ++ G+
Sbjct: 481 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGN 526
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 194 GTSTIIYCTTIKDVEQISKSLT---EAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 250
G II+ ++++ ++ K L + IKA Y G +N R + + F + ++Q++VA
Sbjct: 335 GEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVA 394
Query: 251 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCW 295
+ A G+D + VI+Y P +++ +GR R G C+
Sbjct: 395 SDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCF 439
>AT3G02060.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:354409-358319 FORWARD LENGTH=823
Length = 823
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 116/295 (39%), Gaps = 43/295 (14%)
Query: 20 KTGIVVSPLISLMQDQVMALKER-----GIKAEYLGSAQKDFTVQTKAEHGQFDILFMTP 74
K +V++P I L + + ER IK L QTKAE ++ + T
Sbjct: 320 KQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSR------FQTKAEKEEYLEMIKTG 373
Query: 75 EKACTISTS--FWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVG 132
+ T S ++ + + L VDE R K +K+ S V +
Sbjct: 374 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQ---------RFGVKQKEKIASFKTSVDVLT 424
Query: 133 LTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKP-----FSRGQSFIDELVRE- 186
L+AT I ++L Y+ + F A+L P + SF E V E
Sbjct: 425 LSATP-------IPRTL-----YLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEA 472
Query: 187 ISKEVDSGTSTIIYCTTIKDVEQISKSLTEA--GIKAGMYHGQMNGKSREESHRLFVRDE 244
I E+D G IK +E++ L EA I M HG+ K EE+ F + +
Sbjct: 473 IKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGK 532
Query: 245 VQIMVATIAFGMGIDKPNIRKVIHYGCPK-SIESYYQESGRCGRDGIPSVCWLYY 298
++I++ T G+D N +I + + YQ GR GR + +L+Y
Sbjct: 533 IKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 587
>AT3G02060.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:354412-358319 FORWARD LENGTH=822
Length = 822
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 116/295 (39%), Gaps = 43/295 (14%)
Query: 20 KTGIVVSPLISLMQDQVMALKER-----GIKAEYLGSAQKDFTVQTKAEHGQFDILFMTP 74
K +V++P I L + + ER IK L QTKAE ++ + T
Sbjct: 319 KQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSR------FQTKAEKEEYLEMIKTG 372
Query: 75 EKACTISTS--FWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVG 132
+ T S ++ + + L VDE R K +K+ S V +
Sbjct: 373 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQ---------RFGVKQKEKIASFKTSVDVLT 423
Query: 133 LTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKP-----FSRGQSFIDELVRE- 186
L+AT I ++L Y+ + F A+L P + SF E V E
Sbjct: 424 LSATP-------IPRTL-----YLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEA 471
Query: 187 ISKEVDSGTSTIIYCTTIKDVEQISKSLTEA--GIKAGMYHGQMNGKSREESHRLFVRDE 244
I E+D G IK +E++ L EA I M HG+ K EE+ F + +
Sbjct: 472 IKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGK 531
Query: 245 VQIMVATIAFGMGIDKPNIRKVIHYGCPK-SIESYYQESGRCGRDGIPSVCWLYY 298
++I++ T G+D N +I + + YQ GR GR + +L+Y
Sbjct: 532 IKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 586
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%)
Query: 174 SRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSR 233
S +S + +L+ + D + T+++ T + + + L A HG + R
Sbjct: 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQER 447
Query: 234 EESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSV 293
E + R F I+VAT G+D P++ V+++ P I+ Y GR GR G +
Sbjct: 448 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGI 507
Query: 294 CWLYYTRGD 302
++ +
Sbjct: 508 ATAFFNENN 516
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%)
Query: 174 SRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSR 233
S +S + +L+ + D + T+++ T + + + L A HG + R
Sbjct: 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQER 447
Query: 234 EESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSV 293
E + R F I+VAT G+D P++ V+++ P I+ Y GR GR G +
Sbjct: 448 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGI 507
Query: 294 CWLYYTRGD 302
++ +
Sbjct: 508 ATAFFNENN 516
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%)
Query: 174 SRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSR 233
S +S + +L+ + D + T+++ T + + + L A HG + R
Sbjct: 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQER 447
Query: 234 EESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSV 293
E + R F I+VAT G+D P++ V+++ P I+ Y GR GR G +
Sbjct: 448 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGI 507
Query: 294 CWLYYTRGD 302
++ +
Sbjct: 508 ATAFFNENN 516
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 173 FSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAG-IKAGMYHGQMNGK 231
FSR + ID+L + I++ T V+ I K+L + G + H + +
Sbjct: 450 FSRLKKLIDDL--------GDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQE 501
Query: 232 SREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIP 291
R+ S F + ++V T G G+D ++ +VI+Y P +++ Y GR GR G
Sbjct: 502 QRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKT 561
Query: 292 SVCWLYYTRGDFAKGEFY 309
V + T D K FY
Sbjct: 562 GVATTFLTLED--KDVFY 577
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
T +I+C T + V+ +S+ + HG M K R+ F + ++++ T +
Sbjct: 275 TQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVW 334
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF 303
GID + VI+Y P + E Y GR GR G V + D
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 383
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 52/260 (20%)
Query: 57 TVQTKAEHGQFDILFMTP---EKACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRV 113
T Q + + IL TP + ++ F + L+ G+ + +DEA + + G FR
Sbjct: 199 TEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLM--GVKVLVLDEADHLLDMG--FRR 254
Query: 114 EYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYV----------------- 156
E + + + +V + +AT +++VR +LK ++ +V
Sbjct: 255 EIERI--IAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQM 312
Query: 157 -LVGSFDRA-NLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSL 214
++ S DR +L YG+ L + I+ V G II+CTT ++ L
Sbjct: 313 YMIASLDRHFSLLYGL------------LKKHITDNV--GYKVIIFCTTAMVTRLVADLL 358
Query: 215 TEAGIKAGMYHGQMNGKSREESHRLFVRDEVQ-----IMVATIAFGMGIDKPNIRKVIHY 269
+ + H + + +S+R V DE + I+V + G+D P++ V+
Sbjct: 359 GKLSLNVREIHSR-----KPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQM 413
Query: 270 GCPKSIESYYQESGRCGRDG 289
G P E Y GR GR G
Sbjct: 414 GLPSDREQYIHRLGRTGRKG 433
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
T ++I+ T + V+ ++ + HG M+ +R+ R F ++++ T
Sbjct: 274 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 333
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
GID + VI++ P E+Y GR GR G V + TR D
Sbjct: 334 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 381
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
T ++I+ T + V+ ++ + HG M+ +R+ R F ++++ T
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
GID + VI++ P E+Y GR GR G V + TR D
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
T ++I+ T + V+ ++ + HG M+ +R+ R F ++++ T
Sbjct: 269 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 328
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
GID + VI++ P E+Y GR GR G V + TR D
Sbjct: 329 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 376
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 38/253 (15%)
Query: 57 TVQTKAEHGQFDILFMTPEK---ACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRV 113
T Q + + IL TP + ++ F + L+ G+ + +DEA + + G FR
Sbjct: 501 TEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLM--GVKVLVLDEADHLLDMG--FRR 556
Query: 114 EYKNLDKLRSVLVEVP-----FVGLTATATEKVRFDIIKSLKMNNPY---VLVGS---FD 162
+ + ++ VP F+ +AT E+VR +LK ++ + V GS
Sbjct: 557 D------IERIIAAVPKQRQTFL-FSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQ 609
Query: 163 RANLFYGVKPFSRGQSFIDELVRE-ISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKA 221
+ Y + R S + L++E I+ VD II+CTT ++ L++ +
Sbjct: 610 KVTQMYMIASLDRHFSLLHVLLKEHIADNVD--YKVIIFCTTAMVTRLVADLLSQLSLNV 667
Query: 222 GMYHGQMNGKSREESHRLFVRDEVQ-----IMVATIAFGMGIDKPNIRKVIHYGCPKSIE 276
H + + +S+R V DE + I+V + G+D P++ V+ G P E
Sbjct: 668 REIHSR-----KPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDRE 722
Query: 277 SYYQESGRCGRDG 289
Y GR GR G
Sbjct: 723 QYIHRLGRTGRKG 735
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
T ++I+ T + V+ ++ + HG M+ +R+ R F ++++ T
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
GID + VI++ P E+Y GR GR G V + TR D
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 348 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 407
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
G GID + VI+Y P S ++Y GR GR G
Sbjct: 408 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 442
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 330 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 389
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
G GID + VI+Y P S ++Y GR GR G
Sbjct: 390 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 424
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 206 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 265
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
G GID + VI+Y P S ++Y GR GR G
Sbjct: 266 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 348
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
G GID + VI+Y P S ++Y GR GR G
Sbjct: 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 348
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 289
G GID + VI+Y P S ++Y GR GR G
Sbjct: 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
II+C T + V+ +++ + + HG K R++ F + ++++A+ +
Sbjct: 262 NQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVW 321
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF 303
GID + VI+Y P + E Y GR GR G V + D
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDM 370
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 36/313 (11%)
Query: 3 TGSGKSLCY------QVPPLVVKKTGIVVSPLISLMQDQVMALKE----RGIKAEY-LGS 51
GSGK+ C+ +V P + + + + P L + L++ GI AE +
Sbjct: 140 NGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPD 199
Query: 52 AQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGIS---LFAVDEA-HCISEW 107
+ + T+ ++ TP + W + G++ + DEA H ++
Sbjct: 200 STRGAPAATRGAPVSAHVVIGTPG-----TLKKWMAFKRLGLNHLKILVFDEADHMLATD 254
Query: 108 GHDFRVE-YKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVG---SFDR 163
G FR + K + + V + +AT E V+ + +++K N + + D
Sbjct: 255 G--FRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDS 312
Query: 164 ANLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGM 223
+ V P + Q+ I+ + +I + D G TII+ T +++ K+L E G
Sbjct: 313 VKQYKVVCP--KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTS 369
Query: 224 YHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIES------ 277
HG + R++ + F Q+++AT G D+ + V++Y P E+
Sbjct: 370 VHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYE 429
Query: 278 -YYQESGRCGRDG 289
Y GR GR G
Sbjct: 430 VYLHRVGRAGRFG 442
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 198 IIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMG 257
+I+ + + +++ L I+AG+ H + RE + F E +++AT G
Sbjct: 384 LIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARG 443
Query: 258 IDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
+D I VI+Y P S +Y GR GR G +YT D
Sbjct: 444 MDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 488
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 93 ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMN 152
I F +DE C+ + G FR + + + S + F + EKV + K + +
Sbjct: 124 IMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL- 180
Query: 153 NPYVLVGSFDRAN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDV 207
V +G+ ++ N L V + Q D L + ++Y ++
Sbjct: 181 ---VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDIL----RSQNHFKPPAVVYVSSRVGA 233
Query: 208 EQISKSLTEA-GIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKV 266
+ ++ ++T G+KA HG+ K R + F+ EV ++V+T G G+D +R+V
Sbjct: 234 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 293
Query: 267 IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
I + P +I+ Y GR R G ++ D
Sbjct: 294 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 329
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%)
Query: 195 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 254
T ++I+ T + V+ ++ + HG M+ +R+ R F ++++ T
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340
Query: 255 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
GID + VI++ P E+Y GR GR G V + T D
Sbjct: 341 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 93 ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMN 152
I F +DE C+ + G FR + + + S + F + EKV + K + +
Sbjct: 261 IMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL- 317
Query: 153 NPYVLVGSFDRAN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDV 207
V +G+ ++ N L V + Q D L + ++Y ++
Sbjct: 318 ---VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDIL----RSQNHFKPPAVVYVSSRVGA 370
Query: 208 EQISKSLTE-AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKV 266
+ ++ ++T G+KA HG+ K R + F+ EV ++V+T G G+D +R+V
Sbjct: 371 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 430
Query: 267 IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
I + P +I+ Y GR R G ++ D
Sbjct: 431 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 93 ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMN 152
I F +DE C+ + G FR + + + S + F + EKV + K + +
Sbjct: 261 IMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL- 317
Query: 153 NPYVLVGSFDRAN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDV 207
V +G+ ++ N L V + Q D L + ++Y ++
Sbjct: 318 ---VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDIL----RSQNHFKPPAVVYVSSRVGA 370
Query: 208 EQISKSLTE-AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKV 266
+ ++ ++T G+KA HG+ K R + F+ EV ++V+T G G+D +R+V
Sbjct: 371 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 430
Query: 267 IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 302
I + P +I+ Y GR R G ++ D
Sbjct: 431 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466