Miyakogusa Predicted Gene

Lj0g3v0054409.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054409.2 Non Chatacterized Hit- tr|G7J0G7|G7J0G7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,34.01,0.0000000008, ,CUFF.2434.2
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34680.1 | Symbols: AIR9 | Outer arm dynein light chain 1 pro...   304   2e-83

>AT2G34680.1 | Symbols: AIR9 | Outer arm dynein light chain 1 protein
            | chr2:14616947-14628300 REVERSE LENGTH=1708
          Length = 1708

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/188 (76%), Positives = 162/188 (86%)

Query: 1    MVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVREDGVEGQSTSVSTDPIAVEPDVL 60
            MVGSPDLISIPGET +MYEANVDDVGYRLV +YTP+REDGV+G   S ST+P+AVEPD+L
Sbjct: 1521 MVGSPDLISIPGETGRMYEANVDDVGYRLVVVYTPIREDGVQGHPVSASTEPVAVEPDIL 1580

Query: 61   KEVKQHLDLGSVKFEVLCDKDQGSKKISSVGTYERRILEINRKRLKVVKPATKTSFPNTE 120
            KEV+Q L+ G VKFEVLCDKD   KKI   G  ERR+LE+NRKR+KVVKP +KTSF  TE
Sbjct: 1581 KEVRQKLETGLVKFEVLCDKDPYPKKIVGEGNLERRMLEMNRKRIKVVKPGSKTSFATTE 1640

Query: 121  IRGSYAPPFHVELFRNDQHRLKIVVDSENEADLMVHSRHLRDVIVLVIRGLAQRFNSTSL 180
            +RGSY PPFHVE FRNDQ RL+IVVDSENE D++V SRHLRDVIVLVIRG AQRFNSTSL
Sbjct: 1641 VRGSYGPPFHVETFRNDQRRLRIVVDSENEVDIVVQSRHLRDVIVLVIRGFAQRFNSTSL 1700

Query: 181  NSLLKIET 188
            NSLLKI+T
Sbjct: 1701 NSLLKIDT 1708