Miyakogusa Predicted Gene

Lj0g3v0054409.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054409.1 Non Chatacterized Hit- tr|I1Q829|I1Q829_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,34.29,0.00000000000007, ,CUFF.2434.1
         (330 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34680.1 | Symbols: AIR9 | Outer arm dynein light chain 1 pro...   521   e-148

>AT2G34680.1 | Symbols: AIR9 | Outer arm dynein light chain 1 protein
            | chr2:14616947-14628300 REVERSE LENGTH=1708
          Length = 1708

 Score =  521 bits (1341), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 245/330 (74%), Positives = 280/330 (84%)

Query: 1    MIALTGKAVEGDILTAVEVIPNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDPLPNQS 60
            M+A TGKAV+GD+LTAV+VIP +EIQQ VWSKYK DI+YQWF S E GD  +Y+ L ++ 
Sbjct: 1379 MLAFTGKAVQGDVLTAVQVIPKTEIQQLVWSKYKGDIQYQWFRSPESGDKISYEALSSEI 1438

Query: 61   SCSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTNL 120
            SCSY+VR E+IGRCLKCECVV DVFGR  E+ Y ET P+ PG PR+ KLEIEG+GFHTNL
Sbjct: 1439 SCSYKVRFEDIGRCLKCECVVHDVFGRSSELAYAETDPISPGFPRIEKLEIEGQGFHTNL 1498

Query: 121  YAVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVRE 180
            YAVRG Y GGKEGKS+IQWLRSMVGSPDLISIPGET +MYEANVDDVGYRLV +YTP+RE
Sbjct: 1499 YAVRGNYFGGKEGKSKIQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVVVYTPIRE 1558

Query: 181  DGVEGQSTSVSTDPIAVEPDVLKEVKQHLDLGSVKFEVLCDKDQGSKKISSVGTYERRIL 240
            DGV+G   S ST+P+AVEPD+LKEV+Q L+ G VKFEVLCDKD   KKI   G  ERR+L
Sbjct: 1559 DGVQGHPVSASTEPVAVEPDILKEVRQKLETGLVKFEVLCDKDPYPKKIVGEGNLERRML 1618

Query: 241  EINRKRLKVVKPATKTSFPNTEIRGSYAPPFHVELFRNDQHRLKIVVDSENEADLMVHSR 300
            E+NRKR+KVVKP +KTSF  TE+RGSY PPFHVE FRNDQ RL+IVVDSENE D++V SR
Sbjct: 1619 EMNRKRIKVVKPGSKTSFATTEVRGSYGPPFHVETFRNDQRRLRIVVDSENEVDIVVQSR 1678

Query: 301  HLRDVIVLVIRGLAQRFNSTSLNSLLKIET 330
            HLRDVIVLVIRG AQRFNSTSLNSLLKI+T
Sbjct: 1679 HLRDVIVLVIRGFAQRFNSTSLNSLLKIDT 1708



 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 28/223 (12%)

Query: 37  IRYQWFISSEVGDNFTYDPLPNQSSCSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIET 96
           +++QW ++     NF   P+ N +   Y  + E+IG+ LK EC           +  I +
Sbjct: 528 LKFQWSVADRSLSNFV--PILNATKEVYWPKREDIGKILKIECTPVMAETEYPSIFAI-S 584

Query: 97  APVL--PGIPRVHKLEIEGRGFHTNLYAVRGI--YSGGKEGKSRIQWLR-SMVGSPDLIS 151
           +PV    GIP+V  LE+ G     N+   + +  + GG  GK    WLR    GSP  + 
Sbjct: 585 SPVQRGKGIPKVVSLELNGELVEGNIIKGQAVVAWCGGTPGKCITSWLRRKWNGSP--VV 642

Query: 152 IPGETSKMYEANVDDVGYRLVAIYTPVREDGVEGQSTSVSTDPI---------------A 196
           I G   + Y  ++DDVG  +V +YTPV E G  G+     T+ +               A
Sbjct: 643 IDGAEDEEYMLSLDDVGSSMVFMYTPVTEGGARGEPQYKYTEFVKAAPPSVSNVRITGDA 702

Query: 197 VEPDVLKEVKQHL--DLGSVKFEVL-CDKDQGSKKISSVGTYE 236
           VE  VLK V  +     G  KFE L  +K+ G   + S GT E
Sbjct: 703 VEGCVLKGVGDYFGGKEGPSKFEWLRKNKETGELSLISAGTSE 745



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 64   YRVRLEEIGRCLKCECVVTDVFGRLGE-VVYIETAPVLPGIPRVHKLEIEGRGFHTNLYA 122
            Y   LE++G  L    + T V GR G+ VV I  +PV P  P V  + +  +   ++ Y+
Sbjct: 1241 YTPSLEDVGAYLVLYWIPTRVDGRSGKPVVVITNSPVAPADPEVSNVRV--KKLFSDAYS 1298

Query: 123  VRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVREDG 182
              G Y GG EG S   W R   G+ DLI   G  SK YE    D   R++  YTPVR D 
Sbjct: 1299 GEGEYFGGHEGPSLFSWYRENDGTIDLID--GANSKTYEVTESDYNCRILFGYTPVRSDS 1356

Query: 183  VEGQ 186
            V G+
Sbjct: 1357 VVGE 1360



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 20/198 (10%)

Query: 2    IALTGKAVEGDILTAVEVIPNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDPLPNQSS 61
            + + G  VEG +L+A         ++  W   +    ++WF ++  G   T   +   ++
Sbjct: 992  LHVVGALVEGTMLSA---------EKEYWGGEEGASVFRWFRTNSDG---TPCEIKGATT 1039

Query: 62   CSYRVRLEEIGRCLKC--ECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTN 119
             SY + + +IG  +    E V  D   R    +     P++ G P    LE  G      
Sbjct: 1040 SSYLLSVGDIGYFISVSYEPVRNDR-ARGPTAISEIAGPIVAGHPNCQSLEFLGSMIEGQ 1098

Query: 120  LYAVRGIYSGGKEGKSRIQWLR-SMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPV 178
              +    Y+GG +G   ++W+R    G  +++S    + +  + ++DDVG  +  IYTPV
Sbjct: 1099 RLSFVASYTGGMKGNCYLEWVRVKNNGVKEILS----SDEFLDLSLDDVGESIELIYTPV 1154

Query: 179  REDGVEGQSTSVSTDPIA 196
            REDG+EG   S+ TD IA
Sbjct: 1155 REDGIEGSPRSIRTDGIA 1172



 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 1    MIALTGKAVEGDILTAVEVIPNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDPLPNQS 60
             +++TG  +EG ILTA                ++   +Y+W       D      +P  S
Sbjct: 892  FLSITGDNIEGGILTA---------SYGYIGGHEGKSKYEWHYHKAEND-LPGALIPEAS 941

Query: 61   SC-SYRVRLEEIGRCLKCECVVTDVFGRLGEV-VYIETAPVLPGIPRVHKLEIEGRGFHT 118
                Y +  E IG+ +  +C+     G +GE    +    V PG P    L + G     
Sbjct: 942  GLLQYTITKEAIGKFISFQCIPVRDDGIVGEPRSCMSQERVRPGNPSTVSLHVVGALVEG 1001

Query: 119  NLYAVRGIYSGGKEGKSRIQWLRSMV-GSPDLISIPGETSKMYEANVDDVGYRLVAIYTP 177
             + +    Y GG+EG S  +W R+   G+P    I G T+  Y  +V D+GY +   Y P
Sbjct: 1002 TMLSAEKEYWGGEEGASVFRWFRTNSDGTP--CEIKGATTSSYLLSVGDIGYFISVSYEP 1059

Query: 178  VREDGVEGQST 188
            VR D   G + 
Sbjct: 1060 VRNDRARGPTA 1070



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 23/216 (10%)

Query: 2   IALTGKAVEGDILTAVEVI------PNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDP 55
           + L G+ VEG+I+    V+      P   I    W      +R +W  S  V D    + 
Sbjct: 599 LELNGELVEGNIIKGQAVVAWCGGTPGKCITS--W------LRRKWNGSPVVIDGAEDE- 649

Query: 56  LPNQSSCSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRG 115
                   Y + L+++G  +          G  GE  Y  T  V    P V  + I G  
Sbjct: 650 -------EYMLSLDDVGSSMVFMYTPVTEGGARGEPQYKYTEFVKAAPPSVSNVRITGDA 702

Query: 116 FHTNLYAVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGETSKMYEANVDDVGYRLVAIY 175
               +    G Y GGKEG S+ +WLR    + +L  I   TS+ Y    +DVG  +  +Y
Sbjct: 703 VEGCVLKGVGDYFGGKEGPSKFEWLRKNKETGELSLISAGTSE-YTLTQEDVGTHVTFVY 761

Query: 176 TPVREDGVEGQSTSVSTDPIAVEPDVLKEVKQHLDL 211
            P   +G+EG+  S S+  +   P  + + K   DL
Sbjct: 762 IPANFEGLEGEPVSTSSSVVKPAPPKVTDAKIVGDL 797