Miyakogusa Predicted Gene

Lj0g3v0054359.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054359.2 Non Chatacterized Hit- tr|Q9T0C2|Q9T0C2_ARATH
Putative uncharacterized protein AT4g10650
OS=Arabidop,46.43,1e-16,GTP-BINDING PROTEIN-RELATED,NULL; no
description,NULL,CUFF.2424.2
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosph...    90   4e-19
AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosph...    75   1e-14
AT4G02790.1 | Symbols:  | GTP-binding family protein | chr4:1247...    50   5e-07

>AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:6574472-6576231
           REVERSE LENGTH=377
          Length = 377

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)

Query: 7   LGRRIGTALKEMIGSKKRAPWHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLL 66
           + R IG A+ +   +  R  W+   MAAA  AI ERIPLVD ++ +RDARIP SSE  LL
Sbjct: 9   IAREIGDAVIKASRNPNRR-WYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELL 67

Query: 67  -KNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNCISCGVNAHNKESIRKV 118
            K  P  SK+II LNK +LA    L+   +YF E N +S  VN+HNK+ ++++
Sbjct: 68  RKFSPLPSKRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQL 120


>AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr2:17374118-17376177
           FORWARD LENGTH=386
          Length = 386

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 62/94 (65%), Gaps = 4/94 (4%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L++  S+ ++IIALNK DLA 
Sbjct: 28  WFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKRRIIALNKKDLAN 87

Query: 87  SSGLQAWTEYF--AENNCISCGVNAHNKESIRKV 118
            + L  WT +F  ++ +CI+  +NAH++ S+ K+
Sbjct: 88  PNVLNKWTRHFESSKQDCIA--INAHSRSSVMKL 119


>AT4G02790.1 | Symbols:  | GTP-binding family protein |
           chr4:1247416-1249351 FORWARD LENGTH=372
          Length = 372

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W+   +      + E++ L+D+++ VRDARIP S+    +     + K+I+ LN+ D+  
Sbjct: 98  WYPGHIMKTEKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMIS 157

Query: 87  SSGLQAWTEYFAENNC 102
           +     W  YFA+   
Sbjct: 158 NDDRNDWARYFAKQGI 173