Miyakogusa Predicted Gene

Lj0g3v0054359.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054359.1 Non Chatacterized Hit- tr|D7U731|D7U731_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,60.68,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; seg,NULL;
GTP-BINDING PROTEIN-RELATED,NUL,CUFF.2424.1
         (298 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosph...   244   6e-65
AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosph...   177   8e-45
AT4G02790.1 | Symbols:  | GTP-binding family protein | chr4:1247...    78   7e-15
AT1G52980.1 | Symbols:  | GTP-binding family protein | chr1:1973...    53   2e-07

>AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:6574472-6576231
           REVERSE LENGTH=377
          Length = 377

 Score =  244 bits (622), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 163/233 (69%), Gaps = 2/233 (0%)

Query: 67  LGRRIGTALKEMIGSKKRAPWHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLL 126
           + R IG A+ +   +  R  W+   MAAA  AI ERIPLVD ++ +RDARIP SSE  LL
Sbjct: 9   IAREIGDAVIKASRNPNRR-WYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELL 67

Query: 127 -KNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNCISCGVNAHNKESIRKFLTLIQGQ 185
            K  P  SK+II LNK +LA    L+   +YF E N +S  VN+HNK+ +++ L  +Q Q
Sbjct: 68  RKFSPLPSKRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQLLNFLQSQ 127

Query: 186 VRKLGRTDHANYTATVMLIGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETK 245
           VR+L +  H+ +T T+ML+GIPNVGKSAL N+LH +GRISAAEKGKLKH TVS +PG+TK
Sbjct: 128 VRELHKAGHSGHTTTMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLKHTTVSSQPGDTK 187

Query: 246 DIRSFKIGSHPNIYVLDTPAVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 298
           DI S KIGSHPN+YVLDTP +  P + D ++ +KL LTGAI D  VG  ++A+
Sbjct: 188 DIMSLKIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTGAIPDDIVGELKLAR 240


>AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr2:17374118-17376177
           FORWARD LENGTH=386
          Length = 386

 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 137/214 (64%), Gaps = 7/214 (3%)

Query: 87  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 146
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L++  S+ ++IIALNK DLA 
Sbjct: 28  WFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKRRIIALNKKDLAN 87

Query: 147 SSGLQAWTEYF--AENNCISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLI 204
            + L  WT +F  ++ +CI+  +NAH++ S+ K L L++    KL        T  VM++
Sbjct: 88  PNVLNKWTRHFESSKQDCIA--INAHSRSSVMKLLDLVE---LKLKEVIAREPTLLVMVV 142

Query: 205 GIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIYVLDTP 264
           G+PNVGKSAL+N++HQ+       + +LK ATV P PG T+DI  FKI   P+IYVLD+P
Sbjct: 143 GVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDIAGFKIAHRPSIYVLDSP 202

Query: 265 AVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 298
            VL P +PD++   KL L+G++ D  VG + IAQ
Sbjct: 203 GVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQ 236


>AT4G02790.1 | Symbols:  | GTP-binding family protein |
           chr4:1247416-1249351 FORWARD LENGTH=372
          Length = 372

 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 23/218 (10%)

Query: 87  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 146
           W+   +      + E++ L+D+++ VRDARIP S+    +     + K+I+ LN+ D+  
Sbjct: 98  WYPGHIMKTEKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMIS 157

Query: 147 SSGLQAWTEYFAENNCISCGVNAHNKESIRKFLTL-------IQGQVRKLGRTDHANYTA 199
           +     W  YFA+        N        K   L       + G+ R+ G       + 
Sbjct: 158 NDDRNDWARYFAKQGIKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPR---SV 214

Query: 200 TVMLIGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIY 259
              +IG PNVGKS+L+N L            K K    +P PG T++++  K+G   ++ 
Sbjct: 215 RAGIIGYPNVGKSSLINRLL-----------KRKICAAAPRPGVTREMKWVKLGK--DLD 261

Query: 260 VLDTPAVLSPEVPDVDVISKLILTGAIGDCFVGIKEIA 297
           +LD+P +L   + D     KL +   IG+      ++A
Sbjct: 262 LLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVA 299


>AT1G52980.1 | Symbols:  | GTP-binding family protein |
           chr1:19737493-19740201 FORWARD LENGTH=576
          Length = 576

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 25/185 (13%)

Query: 107 DIIVHVRDARIPSSSECH----LLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNC 162
           D+IV V DAR P  + CH     LK        I+ LNK DL  +   + W    ++   
Sbjct: 217 DVIVQVIDARDPQGTRCHHLEKTLKEHHKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 276

Query: 163 ISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLIGIPNVGKSALVNALHQVG 222
                 + NK   +  L  +   +R+  R        +V  +G PNVGKS+++N L    
Sbjct: 277 TLAFHASVNKSFGKGSLLSV---LRQFARLKSDKQAISVGFVGYPNVGKSSVINTL---- 329

Query: 223 RISAAEKGKLKHA-TVSPEPGETKDIRSFKIGSHPNIYVLDTPAVLSPEVPDVDVISKLI 281
                   + K+   V+P PGETK  +   +     I+++D P V+       D  + ++
Sbjct: 330 --------RTKNVCKVAPIPGETKVWQYITLTKR--IFLIDCPGVV---YQSRDTETDIV 376

Query: 282 LTGAI 286
           L G +
Sbjct: 377 LKGVV 381