Miyakogusa Predicted Gene

Lj0g3v0054069.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054069.1 tr|G7JG11|G7JG11_MEDTR Photosystem II CP43
chlorophyll apoprotein OS=Medicago truncatula
GN=MTR_4g05,99.11,0,seg,NULL; Photosystem I subunits PsaA/PsaB,NULL;
PSII,Photosystem antenna
protein-like,NODE_30987_length_718_cov_381.919220.path1.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00280.1 | Symbols: PSBC | photosystem II reaction center pro...   413   e-116

>ATCG00280.1 | Symbols: PSBC | photosystem II reaction center
           protein C | chrC:33720-35141 FORWARD LENGTH=473
          Length = 473

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/206 (97%), Positives = 203/206 (98%)

Query: 20  VFKASYFGGIYDTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIG 79
           VFKA YFGG+YDTWAPGGGDVRKITNLTLSPS+IFGYLLKSPFGGEGWIVSVDDLEDIIG
Sbjct: 176 VFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIG 235

Query: 80  GHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVFGFIACCFVWFNNT 139
           GHVWLGSICI GGIWHILTKPFAWARRALVWSGEAYLSYSLAALSV GFIACCFVWFNNT
Sbjct: 236 GHVWLGSICIFGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNT 295

Query: 140 AYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGET 199
           AYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGET
Sbjct: 296 AYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGET 355

Query: 200 MRFWDLRAPWLEPLRGPNGLDLSRLK 225
           MRFWDLRAPWLEPLRGPNGLDLSRLK
Sbjct: 356 MRFWDLRAPWLEPLRGPNGLDLSRLK 381