Miyakogusa Predicted Gene

Lj0g3v0048649.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048649.2 Non Chatacterized Hit- tr|K3X1S9|K3X1S9_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G01,26.23,3e-18,zf-SNAP50_C,snRNA-activating protein complex,
subunit 3; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,,CUFF.2262.2
         (442 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28560.1 | Symbols: SRD2 | snRNA activating complex family pr...   339   2e-93
AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family pr...   338   3e-93

>AT1G28560.1 | Symbols: SRD2 | snRNA activating complex family
           protein | chr1:10038197-10040382 REVERSE LENGTH=375
          Length = 375

 Score =  339 bits (870), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/380 (48%), Positives = 244/380 (64%), Gaps = 26/380 (6%)

Query: 84  MALKEVF----------EGRENNENHP-PLLNQPNTGCHVKNSRKKKRGTNNSIL----- 127
           MA+KE F          E   N  +H  PL  +      VKN+  KKR   N+ +     
Sbjct: 1   MAMKEAFPEDYLSQEELEPSLNVSHHENPLAGRAKRKRTVKNTEVKKRTLKNTEVMKMTE 60

Query: 128 ---DSDCMDKVEQIVTIKQKQEEDMAAARLHSFNPVCRTNESACKSL-GTERMMALRSIS 183
              +   + KVEQ+  +KQKQEED AA  LH F+    T +       G E+M +LR I 
Sbjct: 61  KKTEEAYLVKVEQLAKLKQKQEEDKAAVTLHCFSKTSETGKDVVAPPEGFEQMQSLRFID 120

Query: 184 SS-RKVNSGGLQEHTPVQYPEVVLSVEIYHNVRKGLKTQELLVLGRQTLTASRDKIFCSM 242
           ++  K+    +Q      +PEV+L VEIY N RK +KTQE LVLGRQ LT  +D I C+ 
Sbjct: 121 NNYTKLKPSDIQGQVDPLFPEVILCVEIY-NSRK-VKTQEFLVLGRQMLTELKDNIHCAT 178

Query: 243 DQVMQKAGQHDPSGFFLIEDVFYTDLRDPSAIDLTRPILDWVQNSKEEAQKKWEYIITGE 302
           DQVMQKAG++DPSG+FLIEDVF+ DLR+PSA D + PILDW+ NSK+EA KKWE ++TGE
Sbjct: 179 DQVMQKAGKYDPSGYFLIEDVFHNDLRNPSAKDYSYPILDWLWNSKDEALKKWECVLTGE 238

Query: 303 LKQKQKAIMGTVSAPRMPHFSSIEMHKIRFCDLSFRLGAGYLYCHQGECSHTLVVRDMRL 362
           L++KQK ++G   +  +P + + +M    FCD+ FR+GA Y+YCHQG+C HT+V+RDMR+
Sbjct: 239 LQKKQKLVLGEAKSVDLPRYRTADMQSTHFCDIRFRVGASYVYCHQGDCKHTIVIRDMRM 298

Query: 363 MHPDDVNNRAVYPRVTFQLKMRFQKCRVCKIFRATKVTVDDRWTSENPCYFCDDCFALLH 422
            HP+DV NRA YP + F  K R QKC VCKI RA+KV VDD+W SEN  YFCD CF LLH
Sbjct: 299 SHPEDVQNRAAYP-IMFWPKRRIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLH 357

Query: 423 LAEDGSPLYTEYLEYNYHHD 442
            +E+G PL  ++  ++Y H+
Sbjct: 358 -SEEG-PLNCDFPVFDYVHE 375


>AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family
           protein | chr1:10038197-10040382 REVERSE LENGTH=386
          Length = 386

 Score =  338 bits (868), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/401 (46%), Positives = 248/401 (61%), Gaps = 36/401 (8%)

Query: 52  LEAELCEDSSQLSHHDISVDDLKVFSENELMDMALKEVFEGRENNENHPPLLNQPNTGCH 111
           L  E  E S  +SHH  S                + +VFE         PL  +      
Sbjct: 12  LSQEELEPSLNVSHHRAS-------------SQYISKVFEN--------PLAGRAKRKRT 50

Query: 112 VKNSRKKKRGTNNSIL--------DSDCMDKVEQIVTIKQKQEEDMAAARLHSFNPVCRT 163
           VKN+  KKR   N+ +        +   + KVEQ+  +KQKQEED AA  LH F+    T
Sbjct: 51  VKNTEVKKRTLKNTEVMKMTEKKTEEAYLVKVEQLAKLKQKQEEDKAAVTLHCFSKTSET 110

Query: 164 NESACKS-LGTERMMALRSISSS-RKVNSGGLQEHTPVQYPEVVLSVEIYHNVRKGLKTQ 221
            +       G E+M +LR I ++  K+    +Q      +PEV+L VEIY N RK +KTQ
Sbjct: 111 GKDVVAPPEGFEQMQSLRFIDNNYTKLKPSDIQGQVDPLFPEVILCVEIY-NSRK-VKTQ 168

Query: 222 ELLVLGRQTLTASRDKIFCSMDQVMQKAGQHDPSGFFLIEDVFYTDLRDPSAIDLTRPIL 281
           E LVLGRQ LT  +D I C+ DQVMQKAG++DPSG+FLIEDVF+ DLR+PSA D + PIL
Sbjct: 169 EFLVLGRQMLTELKDNIHCATDQVMQKAGKYDPSGYFLIEDVFHNDLRNPSAKDYSYPIL 228

Query: 282 DWVQNSKEEAQKKWEYIITGELKQKQKAIMGTVSAPRMPHFSSIEMHKIRFCDLSFRLGA 341
           DW+ NSK+EA KKWE ++TGEL++KQK ++G   +  +P + + +M    FCD+ FR+GA
Sbjct: 229 DWLWNSKDEALKKWECVLTGELQKKQKLVLGEAKSVDLPRYRTADMQSTHFCDIRFRVGA 288

Query: 342 GYLYCHQGECSHTLVVRDMRLMHPDDVNNRAVYPRVTFQLKMRFQKCRVCKIFRATKVTV 401
            Y+YCHQG+C HT+V+RDMR+ HP+DV NRA YP + F  K R QKC VCKI RA+KV V
Sbjct: 289 SYVYCHQGDCKHTIVIRDMRMSHPEDVQNRAAYP-IMFWPKRRIQKCGVCKIKRASKVAV 347

Query: 402 DDRWTSENPCYFCDDCFALLHLAEDGSPLYTEYLEYNYHHD 442
           DD+W SEN  YFCD CF LLH +E+G PL  ++  ++Y H+
Sbjct: 348 DDKWASENSSYFCDVCFELLH-SEEG-PLNCDFPVFDYVHE 386