Miyakogusa Predicted Gene

Lj0g3v0048599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048599.1 tr|F4XRB8|F4XRB8_9CYAN 50S ribosomal protein L28
OS=Moorea producens 3L GN=rpl28 PE=3 SV=1,63.01,3e-19,no
description,NULL; seg,NULL; L28: ribosomal protein L28,Ribosomal
protein L28; Ribosomal_L28,Ribos,CUFF.2259.1
         (147 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33450.1 | Symbols:  | Ribosomal L28 family | chr2:14173620-1...   172   5e-44

>AT2G33450.1 | Symbols:  | Ribosomal L28 family |
           chr2:14173620-14174380 FORWARD LENGTH=143
          Length = 143

 Score =  172 bits (437), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 101/132 (76%), Gaps = 1/132 (0%)

Query: 17  RAVAVAVAPTKSSFSSTQLGFVTSQLSGLSLCCQPQPTL-KLPXXXXXXXXXXXXXXXCP 75
           R  + A + TKS+ +S +LGF+TSQLSGL +   P   + ++                CP
Sbjct: 12  RMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISLPSFPGIQPIVARRICP 71

Query: 76  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKALKTIEKNGLDA 135
           FTGKKANRANKVSFSNHKTKKLQFVNLQYKR+WWEAGKR+VKLRLSTKALKTIEKNGLDA
Sbjct: 72  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 131

Query: 136 VAKKAGVDLRKK 147
           VAKKAG+DLRKK
Sbjct: 132 VAKKAGIDLRKK 143