Miyakogusa Predicted Gene

Lj0g3v0048489.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048489.2 Non Chatacterized Hit- tr|Q7VAI6|Q7VAI6_PROMA
Uncharacterized conserved protein OS=Prochlorococcus
m,45.45,1e-18,seg,NULL,CUFF.2243.2
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62140.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   142   1e-34

>AT5G62140.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13
           growth stages; Has 60 Blast hits to 60 proteins in 24
           species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi -
           0; Plants - 45; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr5:24954563-24955376 REVERSE
           LENGTH=241
          Length = 241

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 2/130 (1%)

Query: 55  YSVSFKTKRACKLGISRYPDFEYDAEGGMGTGPGAKVTE-NQANNNDLLVSFDLETLYIP 113
           YSVSFKT    KLGISRYPDFEY   GG G G   K+ + N+A+N++L V F++ TLYIP
Sbjct: 52  YSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELSVCFNVATLYIP 111

Query: 114 PLTSSTTKFXXXXXXXXXKIDIVPQALQGSVNQESGKVDLEFKAKFLFSI-GSLYKAPPL 172
            LTS TTKF         KIDI P+  QG++NQESGKV+LEF AKF F+  G +Y+AP L
Sbjct: 112 SLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYRAPAL 171

Query: 173 LVKTVLTTEE 182
           +V+TVLTTEE
Sbjct: 172 VVRTVLTTEE 181