Miyakogusa Predicted Gene

Lj0g3v0048129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048129.1 CUFF.2302.1
         (720 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-39...   617   e-177
AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 | chr1:395...   607   e-173

>AT1G11720.2 | Symbols: SS3 | starch synthase 3 |
           chr1:3951597-3956840 FORWARD LENGTH=1094
          Length = 1094

 Score =  617 bits (1591), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 322/701 (45%), Positives = 429/701 (61%), Gaps = 55/701 (7%)

Query: 7   PLNLKTTFPDRGGGCLKLTPFSGFYLRHPVTTAAGYQSSGCKAGWGGFCVKASSADFSRR 66
           P +L+  F ++G   +K+  FS  +    +++ A  +S     G+       +SADFSR+
Sbjct: 10  PASLRPGFQEKGR--VKINTFSVGFFPRSISSIASLESQYKSNGF--LHQITASADFSRK 65

Query: 67  RQQKKVSIARPKDSAPKGFAPKSPVRXXXXXXXXXXXXXXXGDSLTPTVSEIPGDGNKQT 126
           +Q  +++ + PK S P+GF  ++ V                            G   K+T
Sbjct: 66  KQ-GRMAASGPKSSGPRGFGRRTTV----------------------------GSAQKRT 96

Query: 127 LDVNTDNDNQGVTSNRGEEIGDVSTTDEDVIVLKSREGISYNGDVGIVNESEERTLDYAE 186
              N + D+   TS    E+  +S      + ++ +  +  N         E   LD ++
Sbjct: 97  QKKNGEKDSNA-TSTATNEVSGISKLPAAKVDVQKQSSVVLN---------ERNVLDRSD 146

Query: 187 IDENVQVKSEETSTASDDRISEEASRRLKLELEQNLRRQEIERIAEENLSQGTKMFVYPP 246
           I++       +          +   ++LKLE E NLRR+EIE +A ENL++G +MFVYP 
Sbjct: 147 IED-----GSDRLDKKTTDDDDLLEQKLKLERE-NLRRKEIETLAAENLARGDRMFVYPV 200

Query: 247 VVKPDQDIEVYLNKSLSTLSDEPDILIMGAFNDWRWKSFTLRMNRTHLKGDWWFCELHVH 306
           +VKPD+DIEV+LN++LSTL++EPD+LIMGAFN+WRWKSFT R+ +T +  DW  C LH+ 
Sbjct: 201 IVKPDEDIEVFLNRNLSTLNNEPDVLIMGAFNEWRWKSFTRRLEKTWIHEDWLSCLLHIP 260

Query: 307 KEAYKLDFVFFNGQDVYDNNDGKDFCIPVEGGMDALAFDDFXXXXXXXXXXXXXXXXXXX 366
           KEAYK+DFVFFNGQ VYDNND KDFC+ ++GGMD + F++F                   
Sbjct: 261 KEAYKMDFVFFNGQSVYDNNDSKDFCVEIKGGMDKVDFENFLLEEKLREQEKLAKEEAER 320

Query: 367 XXXXXXXXXXXXXXXXXXXDRSQARVEVETKRETLLPHVKKAVKSVDNVWCIEPTEFKGK 426
                              DR+QA+ E + +RE L P +KKAV S +NVW IEP++FK +
Sbjct: 321 ERQKEEKRRIEAQKAAIEADRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAE 380

Query: 427 DLVRLYYKGGSGPLAQAKEIWIHGGYNNWKDGLSIVERLVKSVL-----KGGDWWYADVV 481
           D V+LYY   SGPL  +KE+W+HGG+NNW DGLSIV +LV + L     K G+WW+A+VV
Sbjct: 381 DTVKLYYNKRSGPLTNSKELWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVV 440

Query: 482 VPDRALVLDWVFADGPPQNAVVYDNNQLQDFHAIVPIAPLDEQYWAEEEQLIYRKLQEDR 541
           VP  ALV+DWVFADGPP+ A +YDNN  QDFHA+VP    +E YW EEE +I+RKLQEDR
Sbjct: 441 VPGGALVIDWVFADGPPKGAFLYDNNGYQDFHALVPQKLPEELYWLEEENMIFRKLQEDR 500

Query: 542 KLRXXXXXXXXXXXXXXXXXXXXXXXXXFLLSQKHIVFTEPLDVQAGSIVTVFYNPSNTN 601
           +L+                         FLLSQK +V+TEPL++QAG+ VTV YNP+NT 
Sbjct: 501 RLKEEVMRAKMEKTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGNPVTVLYNPANTV 560

Query: 602 LKGKPEVWFRCSFNRWSHRIGPLPPQRMLPADN-GTHVKACVKVPLDAYMMDFVFSESES 660
           L GKPEVWFR SFNRW+HR+GPLPPQ+M   D+  +HVK   KVPLDAYMMDFVFSE E 
Sbjct: 561 LNGKPEVWFRGSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVFSEKED 620

Query: 661 GGVFDNKFGMDYHIPVFGGIVKEPPLHITHIAVEMAPIAKC 701
           GG+FDNK G+DYH+PV GGI KEPPLHI HIAVEMAPIAK 
Sbjct: 621 GGIFDNKNGLDYHLPVVGGISKEPPLHIVHIAVEMAPIAKV 661


>AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 |
           chr1:3952460-3956840 FORWARD LENGTH=1042
          Length = 1042

 Score =  607 bits (1565), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 310/646 (47%), Positives = 404/646 (62%), Gaps = 51/646 (7%)

Query: 62  DFSRRRQQKKVSIARPKDSAPKGFAPKSPVRXXXXXXXXXXXXXXXGDSLTPTVSEIPGD 121
           DFSR++Q  +++ + PK S P+GF  ++ V                            G 
Sbjct: 9   DFSRKKQ-GRMAASGPKSSGPRGFGRRTTV----------------------------GS 39

Query: 122 GNKQTLDVNTDNDNQGVTSNRGEEIGDVSTTDEDVIVLKSREGISYNGDVGIVNESEERT 181
             K+T   N + D+   TS    E+  +S      + ++ +  +  N         E   
Sbjct: 40  AQKRTQKKNGEKDSNA-TSTATNEVSGISKLPAAKVDVQKQSSVVLN---------ERNV 89

Query: 182 LDYAEIDENVQVKSEETSTASDDRISEEASRRLKLELEQNLRRQEIERIAEENLSQGTKM 241
           LD ++I++       +          +   ++LKLE E NLRR+EIE +A ENL++G +M
Sbjct: 90  LDRSDIED-----GSDRLDKKTTDDDDLLEQKLKLERE-NLRRKEIETLAAENLARGDRM 143

Query: 242 FVYPPVVKPDQDIEVYLNKSLSTLSDEPDILIMGAFNDWRWKSFTLRMNRTHLKGDWWFC 301
           FVYP +VKPD+DIEV+LN++LSTL++EPD+LIMGAFN+WRWKSFT R+ +T +  DW  C
Sbjct: 144 FVYPVIVKPDEDIEVFLNRNLSTLNNEPDVLIMGAFNEWRWKSFTRRLEKTWIHEDWLSC 203

Query: 302 ELHVHKEAYKLDFVFFNGQDVYDNNDGKDFCIPVEGGMDALAFDDFXXXXXXXXXXXXXX 361
            LH+ KEAYK+DFVFFNGQ VYDNND KDFC+ ++GGMD + F++F              
Sbjct: 204 LLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVEIKGGMDKVDFENFLLEEKLREQEKLAK 263

Query: 362 XXXXXXXXXXXXXXXXXXXXXXXXDRSQARVEVETKRETLLPHVKKAVKSVDNVWCIEPT 421
                                   DR+QA+ E + +RE L P +KKAV S +NVW IEP+
Sbjct: 264 EEAERERQKEEKRRIEAQKAAIEADRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPS 323

Query: 422 EFKGKDLVRLYYKGGSGPLAQAKEIWIHGGYNNWKDGLSIVERLVKSVL-----KGGDWW 476
           +FK +D V+LYY   SGPL  +KE+W+HGG+NNW DGLSIV +LV + L     K G+WW
Sbjct: 324 DFKAEDTVKLYYNKRSGPLTNSKELWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWW 383

Query: 477 YADVVVPDRALVLDWVFADGPPQNAVVYDNNQLQDFHAIVPIAPLDEQYWAEEEQLIYRK 536
           +A+VVVP  ALV+DWVFADGPP+ A +YDNN  QDFHA+VP    +E YW EEE +I+RK
Sbjct: 384 FAEVVVPGGALVIDWVFADGPPKGAFLYDNNGYQDFHALVPQKLPEELYWLEEENMIFRK 443

Query: 537 LQEDRKLRXXXXXXXXXXXXXXXXXXXXXXXXXFLLSQKHIVFTEPLDVQAGSIVTVFYN 596
           LQEDR+L+                         FLLSQK +V+TEPL++QAG+ VTV YN
Sbjct: 444 LQEDRRLKEEVMRAKMEKTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGNPVTVLYN 503

Query: 597 PSNTNLKGKPEVWFRCSFNRWSHRIGPLPPQRMLPADN-GTHVKACVKVPLDAYMMDFVF 655
           P+NT L GKPEVWFR SFNRW+HR+GPLPPQ+M   D+  +HVK   KVPLDAYMMDFVF
Sbjct: 504 PANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVF 563

Query: 656 SESESGGVFDNKFGMDYHIPVFGGIVKEPPLHITHIAVEMAPIAKC 701
           SE E GG+FDNK G+DYH+PV GGI KEPPLHI HIAVEMAPIAK 
Sbjct: 564 SEKEDGGIFDNKNGLDYHLPVVGGISKEPPLHIVHIAVEMAPIAKV 609