Miyakogusa Predicted Gene

Lj0g3v0046959.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0046959.1 tr|E9PZF0|E9PZF0_MOUSE Nucleoside diphosphate
kinase OS=Mus musculus GN=Gm20390 PE=3 SV=1,51.22,0.0001,no
description,Nucleoside diphosphate kinase; NDK,Nucleoside diphosphate
kinase; NDP_KINASES,Nucleos,
NODE_57829_length_937_cov_127.798294.path1.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23895.3 | Symbols:  | Pleckstrin homology (PH) domain-contai...   157   2e-39
AT4G23900.1 | Symbols:  | Nucleoside diphosphate kinase family p...   154   1e-38
AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 |...   149   4e-37
AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDP...    96   6e-21
AT4G09320.1 | Symbols: NDPK1 | Nucleoside diphosphate kinase fam...    95   8e-21

>AT4G23895.3 | Symbols:  | Pleckstrin homology (PH)
           domain-containing protein | chr4:12422883-12426318
           FORWARD LENGTH=467
          Length = 467

 Score =  157 bits (396), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/79 (87%), Positives = 76/79 (96%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           MVWEG+G I YGRKLIGATDPQKSEPGTIRGDLAV+VGRNIIHGSDGPETAKDE++LWFK
Sbjct: 389 MVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFK 448

Query: 61  PEELVNFTSNAEKWVYGSN 79
           PEELV++TSNAEKW+YG N
Sbjct: 449 PEELVSYTSNAEKWIYGQN 467


>AT4G23900.1 | Symbols:  | Nucleoside diphosphate kinase family
           protein | chr4:12424505-12426318 FORWARD LENGTH=237
          Length = 237

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 69/79 (87%), Positives = 76/79 (96%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           MVWEG+G I YGRKLIGATDPQKSEPGTIRGDLAV+VGRNIIHGSDGPETAKDE++LWFK
Sbjct: 159 MVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFK 218

Query: 61  PEELVNFTSNAEKWVYGSN 79
           PEELV++TSNAEKW+YG N
Sbjct: 219 PEELVSYTSNAEKWIYGQN 237


>AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 |
           chr4:6732780-6734298 REVERSE LENGTH=238
          Length = 238

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           MVWEG G I YGRKLIGATDPQKSEPGTIRGDLAV VGRNIIHGSDGPETAKDE++LWFK
Sbjct: 160 MVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFK 219

Query: 61  PEELVNFTSNAEKWVYGSN 79
           P+ELV++TSN+EKW+YG N
Sbjct: 220 PQELVSYTSNSEKWLYGDN 238


>AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2
           | nucleoside diphosphate kinase 2 |
           chr5:25372122-25373838 REVERSE LENGTH=231
          Length = 231

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 52/75 (69%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           M WEG G ++  RKLIG TDP ++EPGTIRGDLAV  GRNI+HGSD PE  K E+ LWFK
Sbjct: 155 MAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFK 214

Query: 61  PEELVNFTSNAEKWV 75
             EL  + S    W+
Sbjct: 215 EGELCKWDSALATWL 229


>AT4G09320.1 | Symbols: NDPK1 | Nucleoside diphosphate kinase family
           protein | chr4:5923424-5924366 FORWARD LENGTH=169
          Length = 169

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           M+WEG+  +  GRK+IGAT+P  SEPGTIRGD A+ +GRN+IHGSD  E+A+ E+ LWF 
Sbjct: 93  MIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF- 151

Query: 61  PEELVNFTSNAEKWVY 76
           P+  VN+ S+   WVY
Sbjct: 152 PDGPVNWQSSVHPWVY 167