Miyakogusa Predicted Gene

Lj0g3v0046679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0046679.1 Non Chatacterized Hit- tr|I1LHG1|I1LHG1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,82.61,0.00000000000003,WD40 repeats,WD40 repeat;
WD_REPEATS_2,WD40 repeat; WD_REPEATS_REGION,WD40-repeat-containing
domain;,NODE_53714_length_1078_cov_116.121521.path1.1
         (291 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50590.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   506   e-143

>AT3G50590.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18771292-18779220 FORWARD LENGTH=1614
          Length = 1614

 Score =  506 bits (1302), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 228/292 (78%), Positives = 267/292 (91%), Gaps = 1/292 (0%)

Query: 1   MEWTTLQHLDLRHIGRGV-RPLQPHAACFHHHQALVAVAIGTYIVELDALTGSKISALGV 59
           MEW T+QHLDLRH+GRGV +PLQPH A FH  QA++AVA+G++I+E DALTG KI+++ +
Sbjct: 1   MEWATVQHLDLRHVGRGVSKPLQPHTAAFHPSQAVIAVAVGSHIMEFDALTGCKIASIDI 60

Query: 60  GAPVVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQISSDSEVHMALT 119
           G+P VRM YSPTS + V+AIL+DCTIRSCDF+ EQTCVLHSPEK++E ISSD+EVH+A+T
Sbjct: 61  GSPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVT 120

Query: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPILYVAYAEGLI 179
           PLQPVVFFGF KRMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHPRLP+LYVAYAEGLI
Sbjct: 121 PLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHPRLPVLYVAYAEGLI 180

Query: 180 RAYNIQSYAIHYTLQLDNTIKLVGAGAFAFHPTLEWVFVGDRRGTLLAWDVSTERPSMIG 239
           RAYNI +YA+HYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTLLAWDVSTERP+MIG
Sbjct: 181 RAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTLLAWDVSTERPNMIG 240

Query: 240 IKQVGSQPIKSVAWLPMLRLLVTLSKDGNLQVWETRITVNPNRPPMAANFFE 291
           I QVGSQPI S++WLPMLR+LVT+SKDG+LQVW+TR+ +NPNRP    NFFE
Sbjct: 241 ITQVGSQPITSISWLPMLRVLVTVSKDGSLQVWKTRVIINPNRPSTQTNFFE 292