Miyakogusa Predicted Gene

Lj0g3v0045219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0045219.1 Non Chatacterized Hit- tr|I3T6Q6|I3T6Q6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,74.8,0,SPERMIDINE_SYNTHASE_1,Spermidine/spermine synthases
family; NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SU,gene.g3291.t1.1
         (385 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20360.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...   284   6e-77
AT1G70310.1 | Symbols: SPDS2 | spermidine synthase 2 | chr1:2648...    70   3e-12
AT1G23820.1 | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420...    67   3e-11
AT1G23820.2 | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420...    66   3e-11
AT5G19530.1 | Symbols: ACL5 | S-adenosyl-L-methionine-dependent ...    51   1e-06
AT5G19530.2 | Symbols: ACL5 | S-adenosyl-L-methionine-dependent ...    51   1e-06

>AT2G20360.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr2:8786070-8789098 FORWARD LENGTH=402
          Length = 402

 Score =  284 bits (727), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 159/254 (62%), Positives = 178/254 (70%), Gaps = 59/254 (23%)

Query: 130 NTICGIVATVFGATGFLGRYVVQHLAKMGSQVLVPFRGSEDCHRHLKLMGDLGQI----- 184
           +++ GIVATVFGATGFLGRY+VQ LAKMGSQVLVPFRGSED  RHLKLMGDLGQ+     
Sbjct: 64  SSVSGIVATVFGATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKF 123

Query: 185 -----------------------------------------------SKEHGGIMRFIQV 197
                                                          +KEHGGIMR+IQV
Sbjct: 124 DPRDEDSIKAVMAKANVVINLIGREYETRNFSFEDANHHIAEKLALVAKEHGGIMRYIQV 183

Query: 198 SCLGASPSSPSRMLRAKAAAEEAILRELPEATILKPATMIGTEDRILNRWAHFAKKYSFL 257
           SCLGAS SSPSRMLRAKAAAEEA+L  LPEATI++PATMIGTEDRILN W+ F KKY FL
Sbjct: 184 SCLGASVSSPSRMLRAKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKYGFL 243

Query: 258 PLFGDGSTKIQPVYVVDVANALTAALKDDGTSMGKVYELGGPE-------AELMYEVIRE 310
           PL G G+TK QPVYVVDVA A+ AALKDDG+SMGK YELGGP+       AE+MY++IRE
Sbjct: 244 PLIGGGTTKFQPVYVVDVAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIRE 303

Query: 311 WPRYVKVPFPIAKA 324
           WPRYVK+PFPIAKA
Sbjct: 304 WPRYVKLPFPIAKA 317


>AT1G70310.1 | Symbols: SPDS2 | spermidine synthase 2 |
           chr1:26485497-26487352 REVERSE LENGTH=340
          Length = 340

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 40/53 (75%)

Query: 321 IAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
           I+  KKVL+IGGGDGG+LREV+RH  VEQI + EID  VV+  +QY PN + G
Sbjct: 122 ISNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVG 174


>AT1G23820.1 | Symbols: SPDS1 | spermidine synthase 1 |
           chr1:8420278-8422724 FORWARD LENGTH=378
          Length = 378

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 321 IAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
           I   KKVL+IGGGDGG+LREV+RH  +EQI M EID  VV+  +Q+ P+ + G
Sbjct: 162 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG 214


>AT1G23820.2 | Symbols: SPDS1 | spermidine synthase 1 |
           chr1:8420278-8422480 FORWARD LENGTH=327
          Length = 327

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 321 IAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
           I   KKVL+IGGGDGG+LREV+RH  +EQI M EID  VV+  +Q+ P+ + G
Sbjct: 162 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG 214


>AT5G19530.1 | Symbols: ACL5 | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:6589176-6591091 REVERSE LENGTH=339
          Length = 339

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 286 DGTSMGKVYELGG-----PEAELMYEVIREWPRYVKVPFPIAKAKKVLIIGGGDGGMLRE 340
           D    GKV  + G        E +Y      P  +  P P    K V I+GGG+G   RE
Sbjct: 68  DTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNP----KTVFIMGGGEGSAARE 123

Query: 341 VSRHPGVEQITMVEIDAGVVEFCRQYLPNHS 371
           + +H  +E++ M +ID  VV+FCR++L  +S
Sbjct: 124 ILKHTTIEKVVMCDIDQEVVDFCRRFLTVNS 154


>AT5G19530.2 | Symbols: ACL5 | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:6589176-6591070 REVERSE LENGTH=332
          Length = 332

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 286 DGTSMGKVYELGG-----PEAELMYEVIREWPRYVKVPFPIAKAKKVLIIGGGDGGMLRE 340
           D    GKV  + G        E +Y      P  +  P P    K V I+GGG+G   RE
Sbjct: 61  DTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNP----KTVFIMGGGEGSAARE 116

Query: 341 VSRHPGVEQITMVEIDAGVVEFCRQYLPNHS 371
           + +H  +E++ M +ID  VV+FCR++L  +S
Sbjct: 117 ILKHTTIEKVVMCDIDQEVVDFCRRFLTVNS 147