Miyakogusa Predicted Gene

Lj0g3v0042719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0042719.1 Non Chatacterized Hit- tr|C6T2R2|C6T2R2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,89.08,0,ZF_RING_2,Zinc finger, RING-type; seg,NULL; no
description,Zinc finger, RING/FYVE/PHD-type;
zf-rbx1,,NODE_31641_length_677_cov_60.376663.path1.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20570.1 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | c...   186   3e-48
AT5G20570.3 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | c...   175   7e-45
AT5G20570.2 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | c...   172   5e-44
AT3G42830.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   171   1e-43
AT3G05870.2 | Symbols: APC11 | anaphase-promoting complex/cyclos...    68   1e-12
AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclos...    68   1e-12

>AT5G20570.1 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 |
           chr5:6956905-6958221 REVERSE LENGTH=118
          Length = 118

 Score =  186 bits (472), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 97/119 (81%), Gaps = 1/119 (0%)

Query: 1   MATLDSDVQMVXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
           MATLDSDV M+                    RFEIKKW+AVALWAWDIVVDNCAICRNHI
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAK-RFEIKKWSAVALWAWDIVVDNCAICRNHI 59

Query: 61  MDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 60  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118


>AT5G20570.3 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 |
           chr5:6956905-6958221 REVERSE LENGTH=136
          Length = 136

 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 96/137 (70%), Gaps = 19/137 (13%)

Query: 1   MATLDSDVQMVXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWD------------- 47
           MATLDSDV M+                    RFEIKKW+AVALWAW              
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAK-RFEIKKWSAVALWAWGNLENPYTLSSIGL 59

Query: 48  -----IVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTR 102
                IVVDNCAICRNHIMD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTR
Sbjct: 60  SMFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR 119

Query: 103 QVCPLDNSEWEFQKYGH 119
           QVCPLDNSEWEFQKYGH
Sbjct: 120 QVCPLDNSEWEFQKYGH 136


>AT5G20570.2 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 |
           chr5:6956905-6958221 REVERSE LENGTH=142
          Length = 142

 Score =  172 bits (436), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 97/143 (67%), Gaps = 25/143 (17%)

Query: 1   MATLDSDVQMVXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
           MATLDSDV M+                    RFEIKKW+AVALWAWDIVVDNCAICRNHI
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAK-RFEIKKWSAVALWAWDIVVDNCAICRNHI 59

Query: 61  MDRCIECQANQASSTADECTVAW------------------------GVCNHAFHFHCIS 96
           MD CIECQANQAS+T++ECTVAW                        GVCNHAFHFHCIS
Sbjct: 60  MDLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCIS 119

Query: 97  RWLKTRQVCPLDNSEWEFQKYGH 119
           RWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 120 RWLKTRQVCPLDNSEWEFQKYGH 142


>AT3G42830.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:14929714-14930678 REVERSE LENGTH=115
          Length = 115

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 93/119 (78%), Gaps = 4/119 (3%)

Query: 1   MATLDSDVQMVXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
           MA+L+SDV M                     RFE+KKW+AVALWAWDIVVDNCAICRNHI
Sbjct: 1   MASLNSDVIM----GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHI 56

Query: 61  MDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MD CIEC ANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 57  MDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115


>AT3G05870.2 | Symbols: APC11 | anaphase-promoting complex/cyclosome
           11 | chr3:1753961-1754802 FORWARD LENGTH=87
          Length = 87

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 33  FEIKKWNAVALWAWDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHF 92
             I  W+AVA W WD   + C ICR      C +C+        D+C + WG CNHAFH 
Sbjct: 6   LRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHL 60

Query: 93  HCISRWLKTRQV---CPLDNSEWEFQK 116
           HCI +W+ ++     CP+   EW+F++
Sbjct: 61  HCILKWVNSQTSQAHCPMCRREWQFKE 87


>AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclosome
           11 | chr3:1753961-1754802 FORWARD LENGTH=87
          Length = 87

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 33  FEIKKWNAVALWAWDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHF 92
             I  W+AVA W WD   + C ICR      C +C+        D+C + WG CNHAFH 
Sbjct: 6   LRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHL 60

Query: 93  HCISRWLKTRQV---CPLDNSEWEFQK 116
           HCI +W+ ++     CP+   EW+F++
Sbjct: 61  HCILKWVNSQTSQAHCPMCRREWQFKE 87