Miyakogusa Predicted Gene

Lj0g3v0041649.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0041649.1 Non Chatacterized Hit- tr|A2YTG5|A2YTG5_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,43.81,0.00000000000001,WD_REPEATS_1,WD40 repeat, conserved site;
WD40 repeats,WD40 repeat; WD40 repeat-like,WD40-repeat-con,CUFF.1947.1
         (469 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80710.1 | Symbols: DRS1 | DROUGHT SENSITIVE 1 | chr1:3033349...   338   6e-93
AT5G58760.1 | Symbols: DDB2 | damaged DNA binding 2 | chr5:23730...    87   4e-17
AT2G43770.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    56   7e-08
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fam...    53   4e-07
AT5G23430.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    53   5e-07
AT5G23430.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...    53   5e-07
AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 | c...    52   9e-07
AT1G10580.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    52   1e-06
AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   3e-06
AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    49   6e-06

>AT1G80710.1 | Symbols: DRS1 | DROUGHT SENSITIVE 1 |
           chr1:30333499-30335796 REVERSE LENGTH=516
          Length = 516

 Score =  338 bits (866), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 157/304 (51%), Positives = 202/304 (66%), Gaps = 8/304 (2%)

Query: 172 DPENIARVVPERIVQVQFFPSSSNKMIVVGDKGGHIGFWGVG------KRLTYLYRPHQA 225
           +P+N+ARVVP RI  VQF P  + KM+  GDK G++GFW +           YL+ PH A
Sbjct: 205 EPQNVARVVPGRIFVVQFLPCENVKMVAAGDKLGNVGFWNLDCGNEEDNDGIYLFTPHSA 264

Query: 226 PISGISVQQRCLSKIYTSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCIYF 285
           P+S I  QQ  LS++ +S YDG++RLMD EK +FDLV+++D E IFSLSQ  ND   +YF
Sbjct: 265 PVSSIVFQQNSLSRVISSSYDGLIRLMDVEKSVFDLVYSTD-EAIFSLSQRPNDEQSLYF 323

Query: 286 GDGSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGG 345
           G   G F VWD R GK    W LHE +IN+IDFN +NPH++AT STD TAC WDLR  G 
Sbjct: 324 GQDYGVFNVWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGA 383

Query: 346 DKPTALKTLTHQKYVQSAYFSPSGCSLATTCADNTISIYSGVNLEDATSIYHDNFTGRWL 405
            KP  L T+ H + V SAYFSPSG SLATT  DN I + SG N E+   IYH+N T RW+
Sbjct: 384 KKPKTLSTVNHSRAVHSAYFSPSGLSLATTSLDNYIGVLSGANFENTCMIYHNN-TSRWI 442

Query: 406 SPFRAIWGWDDSYLFIGNMKRGVDVVSATERAIVTTLQSPHMSAIPCRFNAHFTEVGMLA 465
           S F+A+WGWDDSY+++GN+ + +DV++   +  V  L +P   AIPCR + H   VG LA
Sbjct: 443 SKFKAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELHNPLQRAIPCRIHCHPYNVGTLA 502

Query: 466 GATG 469
           G+T 
Sbjct: 503 GSTA 506


>AT5G58760.1 | Symbols: DDB2 | damaged DNA binding 2 |
           chr5:23730741-23733606 REVERSE LENGTH=557
          Length = 557

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 132/305 (43%), Gaps = 34/305 (11%)

Query: 176 IARVVPERIVQVQFFPSSSNKMIVVGDKGGHIGFWGVGK--RLTYLYRPHQAPISGISVQ 233
           + R    R+  ++F P+ +N +++ GDK G IG W  GK          H   ++ +   
Sbjct: 166 VIRYHSRRVTCLEFHPTKNN-ILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFS 224

Query: 234 QRCLSKIYTSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPK--------NDSNCIYF 285
                 +Y++  DG +   D E      +   + +G    +  K        ++   +  
Sbjct: 225 PTNDDMVYSASSDGTIGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLA 284

Query: 286 GDGSGGFTVWDCRTGKCSSSWAL-HE--NKINTIDFNCENPHIVATGSTDRTACTWDLRY 342
            D  G   + D RT   +    L H+  +K+  +D N   P ++ +   D  A  WD+R 
Sbjct: 285 ADNFGFLHMIDHRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIWDMRK 344

Query: 343 TGGDKPTA-LKTLTHQKYVQSAYFSP-SGCSLATTCADNTISIYSGV--NLE-DATSIYH 397
               +P A L  L H++ V SAYFSP SG  + TTC DN I I+  +  NL+  +  I H
Sbjct: 345 L---QPKASLHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIVH 401

Query: 398 DNFTGRWLSPFRAIWGWDDS---------YL---FIGNMKRGVDVVSATERAIVTTLQSP 445
            N   R L+PF+A W   D+         Y+   + G     +D + A+   +V  +  P
Sbjct: 402 SNDFNRHLTPFKAEWDPKDTSESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEVMDP 461

Query: 446 HMSAI 450
           +++ I
Sbjct: 462 NITTI 466


>AT2G43770.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:18134272-18135303 REVERSE LENGTH=343
          Length = 343

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 28/199 (14%)

Query: 228 SGISVQQRCLSKIYTSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCIYFGD 287
           SG   ++  L +++  C + +V L   +  I DL +TSD   I S S  K          
Sbjct: 70  SGSHDREIFLWRVHGDCKNFMV-LKGHKNAILDLHWTSDGSQIVSASPDKT--------- 119

Query: 288 GSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDK 347
                  WD  TGK     A H + +N+       P ++ +GS D TA  WD+R  G   
Sbjct: 120 ----VRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRG--- 172

Query: 348 PTALKTLTHQKYVQSAYFSPSGCSLATTCADNTISIYSGVNLEDATSI--YHDNFTGRWL 405
             A++T   +  + +  FS +   + T   DN + ++     E   ++  + D  TG  L
Sbjct: 173 --AIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSL 230

Query: 406 SPFRAIWGWDDSYLFIGNM 424
           SP       D SYL    M
Sbjct: 231 SP-------DGSYLLTNGM 242


>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family
           protein / WD-40 repeat family protein |
           chr2:7281615-7283583 REVERSE LENGTH=415
          Length = 415

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 227 ISGISVQQRCLSKIYTSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCIYFG 286
           +SG   Q+ CL  +  +  D V+  M         V+   +  I  +S    + N     
Sbjct: 185 LSGSQDQKICLWDVSATPQDKVLNAM--------FVYEGHESAIADVSWHMKNENLFGSA 236

Query: 287 DGSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLR 341
              G   +WD RT +      +HE ++N + FN  N  ++AT S+D T   +DLR
Sbjct: 237 GEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLR 291


>AT5G23430.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:7894073-7899862 REVERSE LENGTH=837
          Length = 837

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 32/204 (15%)

Query: 194 SNKMIVVGDKGGHIGFWGVGK--RLTYLYRPHQAPISGISVQQRCLSKIYTSCYDGVVRL 251
           S++++V G +   +  W +GK   +  LY  H + I  ++     +  +      G ++L
Sbjct: 28  SSRVLVTGGEDHKVNLWAIGKPNAILSLY-GHSSGIDSVTFDASEV-LVAAGAASGTIKL 85

Query: 252 MDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCI---------YFGDGS--GGFTVWDCRTG 300
            D E+       T             + SNCI         +F  GS      +WD R  
Sbjct: 86  WDLEEAKIVRTLTG------------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133

Query: 301 KCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLTHQKYV 360
            C  ++  H   +N + F  +   +V +G  D     WDL  T G   T  K+  H+  +
Sbjct: 134 GCIHTYKGHTRGVNVLRFTPDGRWVV-SGGEDNIVKVWDL--TAGKLLTEFKS--HEGQI 188

Query: 361 QSAYFSPSGCSLATTCADNTISIY 384
           QS  F P    LAT  AD T+  +
Sbjct: 189 QSLDFHPHEFLLATGSADRTVKFW 212


>AT5G23430.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:7894073-7899862 REVERSE LENGTH=836
          Length = 836

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 32/204 (15%)

Query: 194 SNKMIVVGDKGGHIGFWGVGK--RLTYLYRPHQAPISGISVQQRCLSKIYTSCYDGVVRL 251
           S++++V G +   +  W +GK   +  LY  H + I  ++     +  +      G ++L
Sbjct: 28  SSRVLVTGGEDHKVNLWAIGKPNAILSLY-GHSSGIDSVTFDASEV-LVAAGAASGTIKL 85

Query: 252 MDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCI---------YFGDGS--GGFTVWDCRTG 300
            D E+       T             + SNCI         +F  GS      +WD R  
Sbjct: 86  WDLEEAKIVRTLTG------------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133

Query: 301 KCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLTHQKYV 360
            C  ++  H   +N + F  +   +V +G  D     WDL  T G   T  K+  H+  +
Sbjct: 134 GCIHTYKGHTRGVNVLRFTPDGRWVV-SGGEDNIVKVWDL--TAGKLLTEFKS--HEGQI 188

Query: 361 QSAYFSPSGCSLATTCADNTISIY 384
           QS  F P    LAT  AD T+  +
Sbjct: 189 QSLDFHPHEFLLATGSADRTVKFW 212


>AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 |
           chr4:9023775-9027443 FORWARD LENGTH=486
          Length = 486

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 14/197 (7%)

Query: 187 VQFFPSSSNKMIVVGDKGGHIGFWGVGKRLTYL-YRPHQAPISGISVQQRCLSKIYTSCY 245
           V F PS  N+    G     I  W V   +  L    H   + G++V  R  + ++++  
Sbjct: 182 VAFDPS--NEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNR-HTYMFSAGD 238

Query: 246 DGVVRLMDAEKEIFDLVFTSDDEGIFSLS-QPKNDSNCIYFGDGSGGFTVWDCRTGKCSS 304
           D  V+  D E+      +     G++ L+  P  D   +  G       VWD RT     
Sbjct: 239 DKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLD--VLLTGGRDSVCRVWDIRTKMQIF 296

Query: 305 SWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLT-HQKYVQSA 363
           + + H+N + ++     +P +V TGS D T   WDLRY        + TLT H+K V++ 
Sbjct: 297 ALSGHDNTVCSVFTRPTDPQVV-TGSHDTTIKFWDLRYG-----KTMSTLTHHKKSVRAM 350

Query: 364 YFSPSGCSLATTCADNT 380
              P   + A+  ADNT
Sbjct: 351 TLHPKENAFASASADNT 367


>AT1G10580.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:3491560-3493665 REVERSE LENGTH=573
          Length = 573

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 24/222 (10%)

Query: 180 VPERIVQ-----------VQFFPSSSNKMIVVGDKGGHIGFWGV--GKRLTYLYRPHQAP 226
           +P+R+V            ++FFP   + ++  G     +  W V    +    Y  H   
Sbjct: 270 IPKRLVHTWSGHTKGVSAIRFFPKQGHLLLSAG-MDCKVKIWDVYNSGKCMRTYMGHAKA 328

Query: 227 ISGISVQQRCLSKIYTSCYDGVVRLMDAEK-EIFDLVFTSDDEGIFSLSQPKNDSNCIYF 285
           +  I       SK  T+ YD  ++  D E  ++     T     +  L+   +  N +  
Sbjct: 329 VRDICFSNDG-SKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLA 387

Query: 286 GDGSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGG 345
           G        WD  TG+ +  +  H   +NTI F  +N     T S D++   W+      
Sbjct: 388 GMSDKKIVQWDINTGEVTQEYDQHLGAVNTITF-VDNNRRFVTSSDDKSLRVWEFGI--- 443

Query: 346 DKPTALKTLT--HQKYVQSAYFSPSGCSLATTCADNTISIYS 385
             P  +K ++  H   + S    P+G  LA    DN I IYS
Sbjct: 444 --PVVIKYISEPHMHSMPSISVHPNGNWLAAQSLDNQILIYS 483


>AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:3733406-3739363 FORWARD LENGTH=1021
          Length = 1021

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 30/203 (14%)

Query: 194 SNKMIVVGDKGGHIGFWGVGKRLTYLYR-PHQAPISGISVQQRCLSKIYTSCYDGVVRLM 252
           ++++++ G     +  W +GK  + +    H +P+  ++     +  +      GV++L 
Sbjct: 27  TSRLLLTGGDDYKVNLWSIGKTTSPMSLCGHTSPVDSVAFNSEEV-LVLAGASSGVIKLW 85

Query: 253 DAEKEIFDLVFTSDDEGIFSLSQPKNDSNC-----------IYFGDGSGGFTVWDCRTGK 301
           D E+      FT             + SNC           +  G       VWD R   
Sbjct: 86  DLEESKMVRAFTG------------HRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKG 133

Query: 302 CSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLTHQKYVQ 361
           C  ++  H   I+TI+F+ +   +V+ G  D     WDL  T G      K   H+  ++
Sbjct: 134 CIQTYKGHTRGISTIEFSPDGRWVVS-GGLDNVVKVWDL--TAGKLLHEFK--CHEGPIR 188

Query: 362 SAYFSPSGCSLATTCADNTISIY 384
           S  F P    LAT  AD T+  +
Sbjct: 189 SLDFHPLEFLLATGSADRTVKFW 211


>AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:2701448-2706910 FORWARD LENGTH=839
          Length = 839

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 16/196 (8%)

Query: 194 SNKMIVVGDKGGHIGFWGVGK--RLTYLYRPHQAPISGISVQQRCLSKIYTSCYDGVVRL 251
           S++++V G +   +  W +GK   +  LY  H + I  ++        +      G ++L
Sbjct: 28  SSRVLVTGGEDHKVNLWAIGKPNAILSLY-GHSSGIDSVTFDA-SEGLVAAGAASGTIKL 85

Query: 252 MDAEKEIFDLVFTSDDEGIFSLS-QPKNDSNCIYFGDGS--GGFTVWDCRTGKCSSSWAL 308
            D E+       T       S++  P  +    +F  GS      +WD R   C  ++  
Sbjct: 86  WDLEEAKVVRTLTGHRSNCVSVNFHPFGE----FFASGSLDTNLKIWDIRKKGCIHTYKG 141

Query: 309 HENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLTHQKYVQSAYFSPS 368
           H   +N + F  +   IV +G  D     WDL  T G      K+  H+  +QS  F P 
Sbjct: 142 HTRGVNVLRFTPDGRWIV-SGGEDNVVKVWDL--TAGKLLHEFKS--HEGKIQSLDFHPH 196

Query: 369 GCSLATTCADNTISIY 384
              LAT  AD T+  +
Sbjct: 197 EFLLATGSADKTVKFW 212