Miyakogusa Predicted Gene

Lj0g3v0040799.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0040799.1 Non Chatacterized Hit- tr|B7PMF6|B7PMF6_IXOSC
Putative uncharacterized protein OS=Ixodes scapularis
,32.14,8e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; TIM21,Mitochondrial inner membrane transl,CUFF.1876.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00026.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   261   3e-70

>AT4G00026.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: cultured cell; CONTAINS
           InterPro DOMAIN/s: Mitochondrial inner membrane
           translocase complex, subunit Tim21 (InterPro:IPR013261);
           Has 35333 Blast hits to 34131 proteins in 2444 species:
           Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
           991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr4:11634-13285 REVERSE
           LENGTH=269
          Length = 269

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 149/195 (76%), Gaps = 2/195 (1%)

Query: 43  ENHRSPSFARFLSSRAKREPGQSTEKTKKEISKVEDTFDDAPTYHIPEKPVTFVEGASYS 102
           +N  S  F R  +SR  +EPG    K KKE++ VED FD +PTYHIPEKPVTF EGASYS
Sbjct: 76  KNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFD-SPTYHIPEKPVTFTEGASYS 134

Query: 103 XXXXXXXXXXXXXXXXXFKELIFQPKEYKIYNKALKRIQDDPQVRVRIGNPITGYGQESR 162
                            FKELIFQPKEYK+++KALKRIQDD QVRVRIG+PI GYGQE+R
Sbjct: 135 LVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQETR 194

Query: 163 NRAARQRIPHRVWTDEDNVEHVEVNFYIRGPHGHGKIFAEMFK-PADNEWQFTYLIVEIK 221
           NRAARQRIP+RV+TDED VEHVEVNFYIRGP G GK++ EMFK  A+ EW++TYLIVEI 
Sbjct: 195 NRAARQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIVEIL 254

Query: 222 APSPAQLILESYIPA 236
            PSPA+L+LESY+PA
Sbjct: 255 TPSPAKLMLESYLPA 269