Miyakogusa Predicted Gene

Lj0g3v0038999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038999.1 Non Chatacterized Hit- tr|I3SV60|I3SV60_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.35,0,seg,NULL;
no description,NULL; Rhomboid-like,NULL; DUF1751,Protein of unknown
function DUF1751, inte,CUFF.1778.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07950.1 | Symbols:  | rhomboid protein-related | chr3:253198...   375   e-104

>AT3G07950.1 | Symbols:  | rhomboid protein-related |
           chr3:2531982-2534277 FORWARD LENGTH=304
          Length = 304

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/270 (69%), Positives = 223/270 (82%), Gaps = 5/270 (1%)

Query: 1   MSTPTTVSWGTGLFSGFTRLCKGLAVVLVGSHLLIHFFPSAVNYLALIPARTIPFAWNLI 60
           MS+P     GT +F+ FT+LCKGLA+VLV  HL++ F P+ V YLALIPARTIPFAWNLI
Sbjct: 1   MSSP-----GTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLI 55

Query: 61  TAGYIEQTVYGVVVSTFSLLFFGKLLEPIWGSREFCKFIFVVNFLTSVSVFITAIALYYI 120
           T+GY E +VYGVV ST SLLF GK LEP+WGS EF KFIFVVNFLT + VF+TAIALYYI
Sbjct: 56  TSGYFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYI 115

Query: 121 TRQENYLYMPLSGFHGVISGFLVGLKQIIPDQELPFIKIKTKWLPSITLLLSIAVCFWTL 180
           TR E YLYMP +GFHGV++G LVG+KQIIPDQE+  +KIK KWLPSI L+LSIA  F+TL
Sbjct: 116 TRLEVYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTL 175

Query: 181 EATSYLPTIVSGTYISWIYLRYWQRKPETKHRGDPSEDFAFSSFFPELLRPFIDPIASIF 240
           ++ +YLPT++ GTY+ W+YLRY QR+PETK RGDPS+DFAFS+FFPELLRP IDPIA IF
Sbjct: 176 DSAAYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIF 235

Query: 241 HRMLCGRSDASNDGQDYSLGSEPLPGSDSV 270
           HRMLCGRS+A+++  DYS    PLPGSDS 
Sbjct: 236 HRMLCGRSNATSEDHDYSTSGAPLPGSDSA 265