Miyakogusa Predicted Gene
- Lj0g3v0038839.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0038839.1 Non Chatacterized Hit- tr|C0PEC8|C0PEC8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,27.37,5e-18,seg,NULL,
NODE_43026_length_1996_cov_110.660324.path1.1
(614 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G36990.1 | Symbols: | unknown protein; LOCATED IN: chloropla... 320 1e-87
AT4G08510.1 | Symbols: | unknown protein; LOCATED IN: chloropla... 239 3e-63
>AT1G36990.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast
hits to 1779 proteins in 339 species: Archae - 2;
Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants -
111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI
BLink). | chr1:14027594-14029711 REVERSE LENGTH=581
Length = 581
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 236/586 (40%), Positives = 320/586 (54%), Gaps = 38/586 (6%)
Query: 1 MEKSEPALVPQWLRXXXXXXXXXXXXHHFATPSTHTDAPYVARQTRNRSSKTSNDYDSPR 60
M+K E +L P+WLR H + S+H+D+ + +RNR+S++ +D DS
Sbjct: 1 MDKGEHSLAPEWLRSSGHASGGGSSNHLLVSSSSHSDSASLQYNSRNRNSRSKSDVDSIH 60
Query: 61 SVFLEXXXXXXXXXXXXNGSAKHAYXXXX--XXXXXXXXXXXXXXXNYVDHWDRDCSEPF 118
S FL+ NGSAKHAY +YVD WD D S P
Sbjct: 61 SPFLDRSSSTNSRRGSSNGSAKHAYSSFNFNRSQRDKDRSRDKDRVSYVDPWDLDTSIPL 120
Query: 119 ADLFSGRIERDTLRRSHSMVSRRQNEILTPRVAVDTKSXXXXXXXXXXDLHSRGSIGSSI 178
+ +GR + D LRRSHSMV+R+Q E L+ + V + L S SIG+S
Sbjct: 121 RTILTGR-DPDPLRRSHSMVTRKQGEHLSRGLTVGLNNGGSSNSYNGNGLLSGPSIGNSF 179
Query: 179 QKAVFDKDFPSLGAEERQGITEIGRVTSPGLGATASQTLPVSSSALIGGEGWTSALAEVP 238
Q+ FDKDFPSLGAEE+Q ++ RV+SPG+ + Q LPV +SALIGGEGWTSALAEVP
Sbjct: 180 QRTGFDKDFPSLGAEEKQNGQDVVRVSSPGISSVV-QNLPVGNSALIGGEGWTSALAEVP 238
Query: 239 PIIGNNTTGSLNLQQTXXXXXXXXXXXXXXXXNMAEALVQTPSRARSTPEVSVQTQRLEE 298
+I TGSL NMAEALVQ P+R + P+ SV+TQRLE+
Sbjct: 239 NVIEKACTGSLT--SPKANAVSAGTLTGPSGLNMAEALVQAPARTHTPPQGSVKTQRLED 296
Query: 299 MAIKQSRQLIPVTPSMPKALVNNSSEKSKPKATARNAEMNMA-AKSVLQQPSALHIANHS 357
+AIKQSRQLIPV PS PK L NSS+KSK K R E +A +++ LQQP+ L + S
Sbjct: 297 LAIKQSRQLIPVVPSAPKGLSLNSSDKSKTKQVVRTGETCLAPSRNALQQPAVLLGSFQS 356
Query: 358 VRSGNAKGDAPKTSGKFTDLKSVVWENGVSPTAKDALSPTNYSNSKP--SNHIPVASAAA 415
SG K + K LK ENGVS K++ SP+ +N++ S + +
Sbjct: 357 NPSGQIKPEK-----KLLVLKP-ARENGVS-AVKESGSPSANTNTRAASSQLMSNTQSTQ 409
Query: 416 SAPLRNPNNLKSPTERKPAS-LDLKLGSSMDKKPSISQVQSRNAFFNLIKKKTLMNSSVL 474
SAP+R+ N SP E K AS + G +++KKPS +Q QSR+AF++ +K+K ++S+
Sbjct: 410 SAPVRSTN---SPKELKGASAFSMISGQTIEKKPSAAQAQSRSAFYSALKQKQTASTSIT 466
Query: 475 PESSPAVSSPLMDKPGEVNIEPVAPLANPQDLGNSAEVTSNGNACLEV--------HTLP 526
+ P SS EV L + +DL S +S + +EV HT
Sbjct: 467 TD--PVSSSTSASSSVEVK------LNSSKDLIASDPSSSQATSGVEVTDSVQVASHTSG 518
Query: 527 DNENDTIPDEEEAAFLRSLGWEEDSGEDGGLTEEEINAFYQECMKL 572
DT PDEEEA FLRSLGW E++GE+ LTEEEI++F ++ +L
Sbjct: 519 FEATDT-PDEEEAQFLRSLGWVENNGEE-YLTEEEIDSFLEQYKEL 562
>AT4G08510.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G36990.1); Has 888 Blast hits to 321
proteins in 121 species: Archae - 0; Bacteria - 120;
Metazoa - 86; Fungi - 24; Plants - 79; Viruses - 0;
Other Eukaryotes - 579 (source: NCBI BLink). |
chr4:5411023-5413016 FORWARD LENGTH=551
Length = 551
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 200/586 (34%), Positives = 286/586 (48%), Gaps = 48/586 (8%)
Query: 1 MEKSEPALVPQWLRXXXXXXXXXXXXHHFATPSTHTDAPYVARQTRNRSSKTSNDYDSPR 60
MEK EP+LVP+WLR + R ++NR++++ +D DS
Sbjct: 1 MEKREPSLVPEWLRSSGHGSGVGSSNSLSDS----------LRNSKNRNARSRSDADSVG 50
Query: 61 SVFLEXXXXXXXXXXXXNGSAKHAYXXXX--XXXXXXXXXXXXXXXNYVDHWDRDCSEPF 118
S FL+ NGS KHAY +Y+D WD D S PF
Sbjct: 51 SPFLDRSSSTNTRRGSSNGSTKHAYSSFNFNRSNRDKDRSREKDRMSYMDPWDNDSSMPF 110
Query: 119 ADLFSGRIERDTLRRSHSMVSRRQNEILTPRVAVDTKSXXXXXXXXXXDLHSRGSIGSSI 178
GR E + LRRSHSM +R+Q L V K+ + S S
Sbjct: 111 GTFLIGRGE-EPLRRSHSMTTRKQGNHLAQGFTVGYKNGGNINTFNGHGILPGTSPVKSS 169
Query: 179 QKAVFDKDFPSLGAEERQGITEIGRVTSPGLGATASQTLPVSSSALIGGEGWTSALAEVP 238
++ F+KDFP L EER G ++ R++SPG TA Q+L V++ ALI GEGWTSALAEVP
Sbjct: 170 KRMGFNKDFPLLRGEERNGGPDVVRISSPGRSPTA-QSLSVANPALIIGEGWTSALAEVP 228
Query: 239 PIIGNNTTGSLNLQQTXXXXXXXXXXXXXXXXNMAEALVQTPSRARSTPEVSVQTQRLEE 298
+I + G+ ++ NMAEALVQ P R + P Q Q LE+
Sbjct: 229 NVI-EKSGGA----ESHANVGNSATLSGPACRNMAEALVQAPGRTGTPP----QAQTLED 279
Query: 299 MAIKQSRQLIPVTPSMPKALVNNSSEKSKPKATARNAEMNMAAKSVLQQPSALHIANHSV 358
AI+QSRQLIPV PS PK V+NSS+KSK K R+ E +A+ QQ S++ + N +
Sbjct: 280 RAIRQSRQLIPVVPSAPKGSVHNSSDKSKTKPMFRSGETGLASSRNTQQQSSVMLGN--M 337
Query: 359 RSGNAKGDAPKTSGKFTDLKSVVWENGVSPTAKDALSPTNYSNSKPSNHIPVASAAASAP 418
+S P T+ K LK ENGV SP N S S S +A
Sbjct: 338 QSNPGSQIKPDTTKKLVILKPAR-ENGVVAGG----SPPN-SRVAASQPTTAPSTQFTAS 391
Query: 419 LRNPNNLKSPTERKPASLDLKLGSSMDKKPSISQVQSRNAFFNLIKKKTLMNSSVLP-ES 477
+R+ N P + + AS+++ G + +KK S++Q QSR+AF++ +K+KT N S P ++
Sbjct: 392 VRSTNG---PRDLRGASVNMLAGKAAEKKLSLAQTQSRHAFYSALKQKTCTNISTDPSKT 448
Query: 478 SPAVSSPLMDKPGE----VNIEPVAPLANPQD-LGNSAEVTSNGNACLEVHTLPDNENDT 532
S + S + ++ V +P +P A +D + S E SN + E+
Sbjct: 449 SSCILSSVEEQANSSKELVASDPSSPQAAERDEIMESVEKVSN-----VAERISRFESAV 503
Query: 533 IPDEEEAAFLRSLGWEEDSGEDGGLTEEEINAFYQECMKLGTTTLK 578
PD +EAAFL+SLGW+E+ ++ T EE+ + C K + L+
Sbjct: 504 RPDPKEAAFLKSLGWDENDSDEYTHTMEEMREW---CKKFKPSLLQ 546