Miyakogusa Predicted Gene

Lj0g3v0038759.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038759.2 tr|C0JX14|C0JX14_9CHLO Hypothetical chloroplast
RF65 OS=Pyramimonas parkeae GN=ycf65 PE=4
SV=1,57.53,7e-17,RRP3_SPIOL_P82412;,Ribosomal protein PSRP-3/Ycf65;
PSRP-3_Ycf65,Ribosomal protein PSRP-3/Ycf65,CUFF.1745.2
         (73 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68590.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr1:...   139   5e-34
AT1G68590.2 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr1:...   139   5e-34
AT5G15760.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr5:...   123   2e-29

>AT1G68590.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr1:25757593-25758169 REVERSE LENGTH=166
          Length = 166

 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1   MEKNIGIALDQAVPGHDTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 60
           MEKNIG+ LDQ VPGH TIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATD
Sbjct: 92  MEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATD 151

Query: 61  IINLWQQSGGNLS 73
           IINLWQQSGGNL+
Sbjct: 152 IINLWQQSGGNLT 164


>AT1G68590.2 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr1:25757593-25758169 REVERSE LENGTH=163
          Length = 163

 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1   MEKNIGIALDQAVPGHDTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 60
           MEKNIG+ LDQ VPGH TIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATD
Sbjct: 89  MEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATD 148

Query: 61  IINLWQQSGGNLS 73
           IINLWQQSGGNL+
Sbjct: 149 IINLWQQSGGNLT 161


>AT5G15760.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr5:5143100-5143905 FORWARD LENGTH=183
          Length = 183

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 63/73 (86%)

Query: 1   MEKNIGIALDQAVPGHDTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 60
           M+K+IG+ALD  +PG  TIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATD
Sbjct: 111 MQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATD 170

Query: 61  IINLWQQSGGNLS 73
           IINLWQ SGG+LS
Sbjct: 171 IINLWQSSGGDLS 183