Miyakogusa Predicted Gene

Lj0g3v0038519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038519.1 tr|F6HGF2|F6HGF2_VITVI DNA-directed RNA
polymerase OS=Vitis vinifera GN=VIT_01s0010g00690 PE=3
SV=1,89.81,0,DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL,DNA-directed
RNA polymerase, phage-type; no
description,N,NODE_37037_length_3713_cov_14.511716.path3.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68990.2 | Symbols: MGP3 | male gametophyte defective 3 | chr...   196   3e-51
AT1G68990.1 | Symbols: MGP3 | male gametophyte defective 3 | chr...   196   3e-51
AT5G15700.1 | Symbols:  | DNA/RNA polymerases superfamily protei...   192   5e-50
AT2G24120.1 | Symbols: PDE319, SCA3 | DNA/RNA polymerases superf...   191   6e-50
AT5G15700.2 | Symbols:  | DNA/RNA polymerases superfamily protei...   175   5e-45

>AT1G68990.2 | Symbols: MGP3 | male gametophyte defective 3 |
           chr1:25935499-25940755 REVERSE LENGTH=983
          Length = 983

 Score =  196 bits (498), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 99/108 (91%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M +RQ TAFAPNF+HSLDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN +LREK
Sbjct: 876 MARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREK 935

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELYE P+LENLLE+FQK+FP ++FP LPERGDFDLR+VLES YFFN
Sbjct: 936 FVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 983


>AT1G68990.1 | Symbols: MGP3 | male gametophyte defective 3 |
           chr1:25935499-25940755 REVERSE LENGTH=976
          Length = 976

 Score =  196 bits (498), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 99/108 (91%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M +RQ TAFAPNF+HSLDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN +LREK
Sbjct: 869 MARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREK 928

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELYE P+LENLLE+FQK+FP ++FP LPERGDFDLR+VLES YFFN
Sbjct: 929 FVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976


>AT5G15700.1 | Symbols:  | DNA/RNA polymerases superfamily protein |
            chr5:5115793-5121609 REVERSE LENGTH=1011
          Length = 1011

 Score =  192 bits (487), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/108 (75%), Positives = 98/108 (90%)

Query: 1    MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
            + +RQRTAF PNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N +LREK
Sbjct: 904  IVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREK 963

Query: 61   FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
            FVELY  P+LENLLE+F+++FP L+FP LPERGD DL+ VL+SPYFFN
Sbjct: 964  FVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLKVVLDSPYFFN 1011


>AT2G24120.1 | Symbols: PDE319, SCA3 | DNA/RNA polymerases
           superfamily protein | chr2:10249358-10254530 REVERSE
           LENGTH=993
          Length = 993

 Score =  191 bits (486), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/106 (76%), Positives = 98/106 (92%)

Query: 3   KRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREKFV 62
           ++QRTAF PNFVHSLDG+HMMMTAVAC++AGLNFAGVHDSYWTHACDVD MNR+LREKFV
Sbjct: 888 RKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFV 947

Query: 63  ELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           ELY  P+LE+LL++FQ+++P L FP +P+RGDFDL+EVL+S YFFN
Sbjct: 948 ELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>AT5G15700.2 | Symbols:  | DNA/RNA polymerases superfamily protein |
            chr5:5115572-5121609 REVERSE LENGTH=1051
          Length = 1051

 Score =  175 bits (444), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/105 (70%), Positives = 93/105 (88%), Gaps = 1/105 (0%)

Query: 1    MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
            + +RQRTAF PNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N +LREK
Sbjct: 904  IVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREK 963

Query: 61   FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLR-EVLESP 104
            FVELY  P+LENLLE+F+++FP L+FP LPERGD DL+  ++ +P
Sbjct: 964  FVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLKVNIVSTP 1008