Miyakogusa Predicted Gene

Lj0g3v0036229.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0036229.1 tr|Q7XC52|Q7XC52_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=OSJNBb0089A17.6 PE=4
SV=,30.42,4e-18,seg,NULL; coiled-coil,NULL,gene.g2551.t1.1
         (506 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16790.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   110   3e-24
AT3G60380.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    87   3e-17

>AT4G16790.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr4:9451747-9453168 REVERSE LENGTH=473
          Length = 473

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 96/173 (55%), Gaps = 24/173 (13%)

Query: 18  NKED--PNKFYHHFLYKAAIVLIFFVILPLFPSQAPEFINQSLFARNWEFLHLLFVGIAI 75
           NKED  P KFY  F++KA I+ +   ++P+F SQ PE  NQ+   R  E LHL+FVGIA+
Sbjct: 15  NKEDQNPRKFYSRFIFKALILTVLCAVVPVFLSQTPELANQT---RLLELLHLVFVGIAV 71

Query: 76  SYGLFSRRNNE------TEKENNSKFD----SAQSLVSKFLQVSSFF---EDDAESENPS 122
           SYGLFSRRN +      T   +++K D    ++ S V K L+VSS F    +     +  
Sbjct: 72  SYGLFSRRNYDGGGGGGTSNSDHNKADHSNNNSHSYVPKILEVSSVFNVGHESESEPSDD 131

Query: 123 ESDETTKIYTWSNQHHRNEP------VIVVAKQRNEKPLLLPVRSLKSRLVDD 169
            S +  K  TW N++H   P      V  V+ +  EKPLLLPVRSL    V D
Sbjct: 132 SSGDQRKFQTWKNKYHMKIPEVETRFVDRVSSENREKPLLLPVRSLNYSRVSD 184


>AT3G60380.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is:
           hydroxyproline-rich glycoprotein family protein
           (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins
           in 424 species: Archae - 6; Bacteria - 372; Metazoa -
           2603; Fungi - 655; Plants - 291; Viruses - 28; Other
           Eukaryotes - 2147 (source: NCBI BLink). |
           chr3:22316913-22319144 REVERSE LENGTH=743
          Length = 743

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 135/316 (42%), Gaps = 79/316 (25%)

Query: 48  SQAPEFINQSLFARNWEFLHLLFVGIAISYGLFSRRNNETEKE-NNSKFD-SAQSLVSKF 105
           SQAP+F+ +++  + WE +HLLFVGIA++YGLFSRRN E+  +   ++ D S+ S VS+ 
Sbjct: 51  SQAPDFVGETVLTKFWELIHLLFVGIAVAYGLFSRRNVESAVDLRMTRVDESSLSYVSRI 110

Query: 106 LQVSSFFE---DDAESE-----------------NPSES--------------DETTKIY 131
            QVSS F+   DD   E                   SES               ET ++ 
Sbjct: 111 FQVSSVFDEEFDDNSCEFVDVRSDESVSARASVVGKSESFVVESGELEESSEFGETNEVR 170

Query: 132 TWSNQHHRNEPVIVVAK-------QRNEKPLLLPVRSLKSRLVDDPEAAESCTEPFSVSR 184
            W++Q+ + +  +VVA+           +PL LP+R L+S L                 R
Sbjct: 171 AWNSQYFQGKSKVVVARPAYGLDGHVVHQPLGLPIRRLRSSL-----------------R 213

Query: 185 SNSRTGSKRFSSNLNRARNAEVEGPGSTXXXXXXXXXXXXXLPSPIPWRSRSGKMEPKQE 244
            N+    K F+ + + A NAE E    +               SP+PW++R   M     
Sbjct: 214 DNAALQDKSFADSCDGAVNAEAE----SLLADNFFDEVLAAPASPVPWQARPEMMGIGDN 269

Query: 245 VFDAPAPSSAFAELASKPSMEESEINKVESRSVKSQTQNXXXXXXXXXXXXTKFTPMASS 304
                 P S    L  K     S  +     S  SQ QN             +F+P  S 
Sbjct: 270 YPSNFQPISVDETL--KSISSRSTGSSSSQTSYASQNQN-------------RFSPSRSV 314

Query: 305 SSESLAKNTEDLLRKK 320
           S+ESL  N E+L+++K
Sbjct: 315 SAESLNSNVEELVKEK 330