Miyakogusa Predicted Gene

Lj0g3v0035939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0035939.1 CUFF.1593.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p...    62   1e-10
ATMG00810.1 | Symbols: ORF240B | DNA/RNA polymerases superfamily...    54   5e-08

>AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like
           protein kinase) 8 | chr4:12129485-12134086 FORWARD
           LENGTH=1262
          Length = 1262

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%)

Query: 100 KPLSTPMVKPTSTTASDNSPYQDITSYRRLVGQLLYLTTTRPEISYAVQQLSQHMAAPTN 159
           KP S PM    + +A     + D  +YRRL+G+L+YL  TR +IS+AV +LSQ   AP  
Sbjct: 352 KPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRL 411

Query: 160 QHYQAAIRVL 169
            H QA +++L
Sbjct: 412 AHQQAVMKIL 421


>ATMG00810.1 | Symbols: ORF240B | DNA/RNA polymerases superfamily
           protein | chrM:227709-228431 REVERSE LENGTH=240
          Length = 240

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 100 KPLSTPMVKPTSTTASDNSPYQDITSYRRLVGQLLYLTTTRPEISYAVQQLSQHMAAPTN 159
           KP+STP+    +++ S  + Y D + +R +VG L YLT TRP+ISYAV  + Q M  PT 
Sbjct: 75  KPMSTPLPLKLNSSVS-TAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTL 133

Query: 160 QHYQAAIRVL 169
             +    RVL
Sbjct: 134 ADFDLLKRVL 143