Miyakogusa Predicted Gene

Lj0g3v0035909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0035909.1 tr|F4HRS2|F4HRS2_ARATH HEAT repeat-containing
protein OS=Arabidopsis thaliana GN=SWEETIE PE=4 SV=1,40.91,6e-19,
,CUFF.1578.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67140.3 | Symbols: SWEETIE | HEAT repeat-containing protein ...    98   2e-21
AT1G67140.2 | Symbols: SWEETIE | HEAT repeat-containing protein ...    95   1e-20
AT1G67140.1 | Symbols: SWEETIE | HEAT repeat-containing protein ...    95   1e-20

>AT1G67140.3 | Symbols: SWEETIE | HEAT repeat-containing protein |
            chr1:25101016-25117372 REVERSE LENGTH=2223
          Length = 2223

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 11/132 (8%)

Query: 1    MCLCLSPKRKWNMFLDGLQSPIVSSKLRPCLDESWPVILQALALDAVPVNSEGNDYP-KA 59
            +CLC + K+    FLD +    VS +L+PCL+E+WPVILQAL LDA+PVN    ++  ++
Sbjct: 1402 ICLCQNLKKSQCSFLDEILPHTVSRRLQPCLEEAWPVILQALVLDAIPVNHSVEEFSDRS 1461

Query: 60   LASNAEKHGVTSCQYSMVELKFEDFKFLWGFSLLGLFQSQHPILYRPIIQLDFANAKHGA 119
            L S           + MV L+ EDF+FLWGF++L LFQ  HP     +I    A  K   
Sbjct: 1462 LIST----------HRMVTLEAEDFQFLWGFAVLVLFQGMHPASSMQVIPFSSAKIKSSG 1511

Query: 120  NSPSNEVKPSGV 131
            +S  NE    G+
Sbjct: 1512 DSSINESSFQGL 1523


>AT1G67140.2 | Symbols: SWEETIE | HEAT repeat-containing protein |
            chr1:25101016-25117372 REVERSE LENGTH=2222
          Length = 2222

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 12/132 (9%)

Query: 1    MCLCLSPKRKWNMFLDGLQSPIVSSKLRPCLDESWPVILQALALDAVPVNSEGNDYP-KA 59
            +CLC + K+  + FLD +    VS +L+PCL+E+WPVILQAL LDA+PVN    ++  ++
Sbjct: 1402 ICLCQNLKKSCS-FLDEILPHTVSRRLQPCLEEAWPVILQALVLDAIPVNHSVEEFSDRS 1460

Query: 60   LASNAEKHGVTSCQYSMVELKFEDFKFLWGFSLLGLFQSQHPILYRPIIQLDFANAKHGA 119
            L S           + MV L+ EDF+FLWGF++L LFQ  HP     +I    A  K   
Sbjct: 1461 LIST----------HRMVTLEAEDFQFLWGFAVLVLFQGMHPASSMQVIPFSSAKIKSSG 1510

Query: 120  NSPSNEVKPSGV 131
            +S  NE    G+
Sbjct: 1511 DSSINESSFQGL 1522


>AT1G67140.1 | Symbols: SWEETIE | HEAT repeat-containing protein |
            chr1:25101016-25117372 REVERSE LENGTH=2221
          Length = 2221

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 12/132 (9%)

Query: 1    MCLCLSPKRKWNMFLDGLQSPIVSSKLRPCLDESWPVILQALALDAVPVNSEGNDYP-KA 59
            +CLC + K+  + FLD +    VS +L+PCL+E+WPVILQAL LDA+PVN    ++  ++
Sbjct: 1402 ICLCQNLKKSCS-FLDEILPHTVSRRLQPCLEEAWPVILQALVLDAIPVNHSVEEFSDRS 1460

Query: 60   LASNAEKHGVTSCQYSMVELKFEDFKFLWGFSLLGLFQSQHPILYRPIIQLDFANAKHGA 119
            L S           + MV L+ EDF+FLWGF++L LFQ  HP     +I    A  K   
Sbjct: 1461 LIST----------HRMVTLEAEDFQFLWGFAVLVLFQGMHPASSMQVIPFSSAKIKSSG 1510

Query: 120  NSPSNEVKPSGV 131
            +S  NE    G+
Sbjct: 1511 DSSINESSFQGL 1522