Miyakogusa Predicted Gene

Lj0g3v0034749.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0034749.1 NODE_82763_length_157_cov_20.656052.path1.1
         (39 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44835.2 | Symbols:  | YbaK/aminoacyl-tRNA synthetase-associa...    63   5e-11
AT1G44835.1 | Symbols:  | YbaK/aminoacyl-tRNA synthetase-associa...    63   5e-11

>AT1G44835.2 | Symbols:  | YbaK/aminoacyl-tRNA
          synthetase-associated domain | chr1:16939909-16942337
          FORWARD LENGTH=308
          Length = 308

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query: 1  MGLSKEQLLARLQELQIEFSKYEHPVVLTVEAQAKYVGN 39
          MG +K+QLL RLQEL+I++SKYEHP VLTVE QAKYV +
Sbjct: 1  MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVSS 39


>AT1G44835.1 | Symbols:  | YbaK/aminoacyl-tRNA
          synthetase-associated domain | chr1:16939909-16942337
          FORWARD LENGTH=307
          Length = 307

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query: 1  MGLSKEQLLARLQELQIEFSKYEHPVVLTVEAQAKYVGN 39
          MG +K+QLL RLQEL+I++SKYEHP VLTVE QAKYV +
Sbjct: 1  MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVSS 39