Miyakogusa Predicted Gene

Lj0g3v0033799.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0033799.2 Non Chatacterized Hit- tr|I1KCF6|I1KCF6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,83.91,0,no
description,NULL; NifU_N,NIF system FeS cluster assembly, NifU,
N-terminal; iscU: FeS cluster ass,CUFF.1517.2
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22220.1 | Symbols: ISU1, ATISU1 | SufE/NifU family protein |...   245   8e-66
AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 | chr4:1963386...   226   4e-60
AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5139-58...   194   2e-50

>AT4G22220.1 | Symbols: ISU1, ATISU1 | SufE/NifU family protein |
           chr4:11759444-11760881 REVERSE LENGTH=167
          Length = 167

 Score =  245 bits (626), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 123/164 (75%), Positives = 138/164 (84%), Gaps = 3/164 (1%)

Query: 2   MRIAASAKRIIGTASSSLEAPHPAIRVLPRLYHERVVDHYDNPRNVGSFDKNDPNVGTGL 61
           M +  +AK+ +G   +S ++   ++ +L R YHE V+DHYDNPRNVGSFDKNDPNVGTGL
Sbjct: 1   MMLKQAAKKALGL--TSRQSTPWSVGIL-RTYHENVIDHYDNPRNVGSFDKNDPNVGTGL 57

Query: 62  VGAPACGDVMKLQIKVDEKTGKIVDACFKTFGCGSAIASSSVATEWVIGKEMEEVLTIKN 121
           VGAPACGDVMKLQIKVDEKTG+IVDA FKTFGCGSAIASSSVATEWV GK ME+VLTIKN
Sbjct: 58  VGAPACGDVMKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIKN 117

Query: 122 TEIAKHLSLPPVKLHCSMLAEDAMKAAVKDLVSKRGPASGEKAA 165
           TEIAKHLSLPPVKLHCSMLAEDA+KAAVKD   KR   +G  AA
Sbjct: 118 TEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYKEKRVKTNGAAAA 161


>AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 |
           chr4:1963386-1964308 FORWARD LENGTH=171
          Length = 171

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 133/166 (80%), Gaps = 6/166 (3%)

Query: 1   MMRIAASAKRIIGTASSSLEAPHPAIRVLPRLYHERVVDHYDNPRNVGSFDKNDPNVGTG 60
           M+R   + +  +G AS +   P P   V+ RLYH  V+DHYDNPRNVGSFDKNDPNVGTG
Sbjct: 1   MLR-QTTKRAFLGLASQN-PTPFP---VVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGTG 55

Query: 61  LVGAPACGDVMKLQIKVDEKTGKIVDACFKTFGCGSAIASSSVATEWVIGKEMEEVLTIK 120
           LVGAP CGDVMKLQ+K D  +G+I+DA FKTFGCGSAIA+SSVATEWV GK +EEVLTIK
Sbjct: 56  LVGAPQCGDVMKLQVKFD-GSGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIK 114

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAMKAAVKDLVSKRGPASGEKAAT 166
           N++IAKHLSLPPVKLHCSMLAEDA+KAA+K+   K+  A+GE   T
Sbjct: 115 NSQIAKHLSLPPVKLHCSMLAEDAIKAAIKNYKEKQDKANGETVET 160


>AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5139-5893
           FORWARD LENGTH=163
          Length = 163

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 114/126 (90%), Gaps = 1/126 (0%)

Query: 31  RLYHERVVDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKVDEKTGKIVDACFK 90
           RLYHE V+DH++NPRNVGSF++NDPNVGTGLVGAPACGD+M LQIKVD+ +G+I+D  FK
Sbjct: 25  RLYHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDD-SGQIIDTRFK 83

Query: 91  TFGCGSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAMKAAVK 150
           TFGCGSAIASSSVA+EW+ GK ++EV+TIKN EIAKHL LPPVKLHCSMLAEDA+K+AV+
Sbjct: 84  TFGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVR 143

Query: 151 DLVSKR 156
           D   K+
Sbjct: 144 DYKEKQ 149