Miyakogusa Predicted Gene

Lj0g3v0033239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0033239.1 Non Chatacterized Hit- tr|I1JWX8|I1JWX8_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,75.38,2e-18,
,NODE_45316_length_451_cov_132.219513.path1.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47730.1 | Symbols: ATATH1, ATH1, ABCA2 | ATP-binding cassett...    63   4e-11
AT5G61690.1 | Symbols: ATATH15, ATH15 | ABC2 homolog 15 | chr5:2...    58   1e-09
AT5G61730.1 | Symbols: ATATH11, ATH11 | ABC2 homolog 11 | chr5:2...    55   1e-08

>AT3G47730.1 | Symbols: ATATH1, ATH1, ABCA2 | ATP-binding cassette
           A2 | chr3:17594342-17598828 REVERSE LENGTH=983
          Length = 983

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 6/61 (9%)

Query: 1   MVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRN---LGR--SESVHGVVID 55
           MVEVYW+QD++G+LCISGHS ++PIP+++ + T P    H     LGR     V G+VID
Sbjct: 897 MVEVYWQQDESGSLCISGHSTEMPIPENIPV-TDPVAPGHGGVNLLGRRGRRQVQGIVID 955

Query: 56  P 56
           P
Sbjct: 956 P 956


>AT5G61690.1 | Symbols: ATATH15, ATH15 | ABC2 homolog 15 |
           chr5:24789495-24793487 REVERSE LENGTH=919
          Length = 919

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 1   MVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSESVHGVVID 55
           MVEVYW+QD +G++CISGHS ++ +PQ+V ++  P+     +    + V G+VID
Sbjct: 864 MVEVYWQQDGSGSMCISGHSSEMRVPQNVPVTRPPSPNALGHKSLRQGVRGIVID 918


>AT5G61730.1 | Symbols: ATATH11, ATH11 | ABC2 homolog 11 |
           chr5:24803583-24807898 REVERSE LENGTH=940
          Length = 940

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 4/56 (7%)

Query: 1   MVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSE-SVHGVVID 55
           MVEVYW+QD +G++CISGHS ++ IP++V +   P+++    LG  +  V G+VID
Sbjct: 883 MVEVYWQQDGSGSMCISGHSAEMRIPENVSVIYEPSSQV---LGHGQRRVRGIVID 935