Miyakogusa Predicted Gene

Lj0g3v0033009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0033009.1 tr|F2DY84|F2DY84_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,27.96,1e-17,SUBFAMILY NOT NAMED,NULL; APOSPORY-ASSOCIATED PROTEIN
C-RELATED,NULL; seg,NULL; no description,Glyco,CUFF.1453.1
         (386 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55370.2 | Symbols: NDF5 | NDH-dependent cyclic electron flow...   248   4e-66
AT1G55370.1 | Symbols: NDF5 | NDH-dependent cyclic electron flow...   162   3e-40
AT1G64770.1 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electr...    97   1e-20
AT1G64770.3 | Symbols: NDF2 | NDH-dependent cyclic electron flow...    59   6e-09
AT1G64770.2 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electr...    58   1e-08

>AT1G55370.2 | Symbols: NDF5 | NDH-dependent cyclic electron flow 5
           | chr1:20674852-20676071 FORWARD LENGTH=354
          Length = 354

 Score =  248 bits (634), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 211/339 (62%), Gaps = 49/339 (14%)

Query: 51  INYDYLQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPMWHGGKVE 110
           I+ +YL+ EF+G G TFE+ G ++C+A+++L NGS+A ++L  G+ITSYK  +WHGGKVE
Sbjct: 60  IDVEYLRREFSGHGATFEDIG-ETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVE 118

Query: 111 LLHTAVSEGEYGHAIIQGGVSLNFNFQTIHDDDGESWSPTNWVLHNIKGNAEESIQVELI 170
           LLHT V + E    +I+GGVS  F          +S   ++W L  I G++++ +Q+EL 
Sbjct: 119 LLHTWVEQ-EEEEVVIRGGVSSAFR-------SSDSDEISDWRLQGISGDSKDCVQMEL- 169

Query: 171 NRAAEDKIG---LKYIVTLEEDVLSSELEISNPKSLPLQMIG-SILSHLTVSTPEATYAI 226
            R ++ KI    LK I++L E+ LS EL ++N    P+++ G S++S+LTVSTPEATYA+
Sbjct: 170 -RRSDKKIKEIELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAV 228

Query: 227 GLERSNYCIKPPFESGFVLSPPDSGQEEGDGKIWNSSPLKQLFPRWGANSQNXXXXXXXX 286
           GLE S++    PF   F +   +  +E+               P +G   ++        
Sbjct: 229 GLEGSDFVETTPFLPRFGVVQGEKEEEK---------------PGFGGEEES-------- 265

Query: 287 XXXXXXXXXXXXYKQLRDKLSLVYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSPGSR 346
                       YKQL  ++S +YT AP+SFTVIDRGRRNSVV+GR GFEE Y+YSPGSR
Sbjct: 266 -----------NYKQLNREMSRIYTCAPKSFTVIDRGRRNSVVVGREGFEEVYMYSPGSR 314

Query: 347 VESYSKDAYICVGQAAVLQPIVLGPEEVWKGGQYLQNPN 385
           +ESY+K AY+C+G +++L PI L    VW+G  +L NPN
Sbjct: 315 LESYTKSAYVCIGPSSLLSPISLESGCVWRGVLHLHNPN 353


>AT1G55370.1 | Symbols: NDF5 | NDH-dependent cyclic electron flow 5
           | chr1:20674852-20675857 FORWARD LENGTH=308
          Length = 308

 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/276 (38%), Positives = 161/276 (58%), Gaps = 49/276 (17%)

Query: 51  INYDYLQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPMWHGGKVE 110
           I+ +YL+ EF+G G TFE+ G ++C+A+++L NGS+A ++L  G+ITSYK  +WHGGKVE
Sbjct: 60  IDVEYLRREFSGHGATFEDIG-ETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVE 118

Query: 111 LLHTAVSEGEYGHAIIQGGVSLNFNFQTIHDDDGESWSPTNWVLHNIKGNAEESIQVELI 170
           LLHT V + E    +I+GGVS  F          +S   ++W L  I G++++ +Q+EL 
Sbjct: 119 LLHTWVEQ-EEEEVVIRGGVSSAFR-------SSDSDEISDWRLQGISGDSKDCVQMEL- 169

Query: 171 NRAAEDKIG---LKYIVTLEEDVLSSELEISNPKSLPLQMIG-SILSHLTVSTPEATYAI 226
            R ++ KI    LK I++L E+ LS EL ++N    P+++ G S++S+LTVSTPEATYA+
Sbjct: 170 -RRSDKKIKEIELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAV 228

Query: 227 GLERSNYCIKPPFESGFVLSPPDSGQEEGDGKIWNSSPLKQLFPRWGANSQNXXXXXXXX 286
           GLE S++    PF   F +   +  +E+               P +G   ++        
Sbjct: 229 GLEGSDFVETTPFLPRFGVVQGEKEEEK---------------PGFGGEEES-------- 265

Query: 287 XXXXXXXXXXXXYKQLRDKLSLVYTNAPRSFTVIDR 322
                       YKQL  ++S +YT AP+SFTVIDR
Sbjct: 266 -----------NYKQLNREMSRIYTCAPKSFTVIDR 290


>AT1G64770.1 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron
           flow 1 | chr1:24057549-24059415 FORWARD LENGTH=348
          Length = 348

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 27/344 (7%)

Query: 49  QPINYDYLQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPMW--HG 106
           Q IN + L+++F   G+ F E+  +  M +++++NGS+  L L    + SYK  ++    
Sbjct: 26  QTINTEKLEDKFGRKGIKFSESN-NIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDE 84

Query: 107 GKVELLHTAVSEGEYGHAIIQGGVSLNFNFQTIHDDDGES--WSPTNWVLHNIKGNAEES 164
           G  E+L+T   +        +    +        +  G S   S  +W + +   +A ++
Sbjct: 85  GFEEVLYTVDGD--------ESRGGVGVVIVNGEEPKGGSSVISGCDWSVKDTDSDAIDA 136

Query: 165 IQVELINRAAEDKIGLKYIVTLEEDVLSSELEISNPKSLPLQMIGSILSHLTVSTPEATY 224
           +Q+EL   A    + + YIV+L    +++ L + N    P+ +   I+S+L         
Sbjct: 137 LQIELSCTAG--VLDITYIVSLYPVSMATALVVKNNGRKPVTLKPGIMSYLRFKKRSGAG 194

Query: 225 AIGLERSNYCIKPPFESGF-VLSPPDSGQEEGDGKIWNSSPLKQLFPRWGANSQNXXXXX 283
             GL+  +YC  PP  S F +LSP ++ + E  G  W  S   +    W           
Sbjct: 195 IQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSG--WFGSEEGEKPGIWAVEDSVITLLE 252

Query: 284 XXXXXXXXXXXXXXXYKQLRDKLSLVYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSP 343
                               ++L  VY   P  F  ID+GR     + R GFEE Y+ SP
Sbjct: 253 KKMSRIYGAPPA--------ERLKAVYNTPPSKFETIDQGRGLFFRMIRIGFEEMYVGSP 304

Query: 344 GSRVESYSKDAY-ICVGQAAVLQPIVLGPEEVWKGGQYLQNPNL 386
           GS  + Y K  Y +C G  ++L P+ +   E W+G   +++ NL
Sbjct: 305 GSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIEHDNL 348


>AT1G64770.3 | Symbols: NDF2 | NDH-dependent cyclic electron flow 1
           | chr1:24057549-24059405 FORWARD LENGTH=367
          Length = 367

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 32/222 (14%)

Query: 49  QPINYDYLQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPMW--HG 106
           Q IN + L+++F   G+ F E+  +  M +++++NGS+  L L    + SYK  ++    
Sbjct: 26  QTINTEKLEDKFGRKGIKFSESN-NIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDE 84

Query: 107 GKVELLHTAVSEGEYGHAII----------QGGVSLNFNFQTIHDDDGESWSPTNWVLHN 156
           G  E+L+T   +G+     +          +GG S+               S  +W + +
Sbjct: 85  GFEEVLYTV--DGDESRGGVGVVIVNGEEPKGGSSV--------------ISGCDWSVKD 128

Query: 157 IKGNAEESIQVELINRAAEDKIGLKYIVTLEEDVLSSELEISNPKSLPLQMIGSILSHLT 216
              +A +++Q+EL   A    + + YIV+L    +++ L + N    P+ +   I+S+L 
Sbjct: 129 TDSDAIDALQIELSCTAGV--LDITYIVSLYPVSMATALVVKNNGRKPVTLKPGIMSYLR 186

Query: 217 VSTPEATYAIGLERSNYCIKPPFESGF-VLSPPDSGQEEGDG 257
                     GL+  +YC  PP  S F +LSP ++ + E  G
Sbjct: 187 FKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSG 228


>AT1G64770.2 | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron
           flow 1 | chr1:24057549-24058565 FORWARD LENGTH=313
          Length = 313

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)

Query: 49  QPINYDYLQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPMW--HG 106
           Q IN + L+++F   G+ F E+  +  M +++++NGS+  L L    + SYK  ++    
Sbjct: 26  QTINTEKLEDKFGRKGIKFSESN-NIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDE 84

Query: 107 GKVELLHTAVSEGEYGHAIIQGGVSLNFNFQTIHDDDGES--WSPTNWVLHNIKGNAEES 164
           G  E+L+T   +G+      +    +        +  G S   S  +W + +   +A ++
Sbjct: 85  GFEEVLYTV--DGD------ESRGGVGVVIVNGEEPKGGSSVISGCDWSVKDTDSDAIDA 136

Query: 165 IQVELINRAAEDKIGLKYIVTLEEDVLSSELEISNPKSLPLQMIGSILSHLTVSTPEATY 224
           +Q+EL   A    + + YIV+L    +++ L + N    P+ +   I+S+L         
Sbjct: 137 LQIELSCTAG--VLDITYIVSLYPVSMATALVVKNNGRKPVTLKPGIMSYLRFKKRSGAG 194

Query: 225 AIGLERSNYCIKPPFESGF-VLSPPDSGQEEGDG 257
             GL+  +YC  PP  S F +LSP ++ + E  G
Sbjct: 195 IQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSG 228