Miyakogusa Predicted Gene
- Lj0g3v0032719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0032719.1 Non Chatacterized Hit- tr|J3M3H4|J3M3H4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G1,40.16,0.000000000000001, ,CUFF.1477.1
(265 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13950.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 247 6e-66
AT5G13950.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 247 6e-66
AT5G13950.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 245 2e-65
AT3G45830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 72 5e-13
AT1G02290.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 71 7e-13
>AT5G13950.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins
in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56;
Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr5:4496196-4500206 REVERSE
LENGTH=939
Length = 939
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 169/264 (64%), Gaps = 8/264 (3%)
Query: 1 MAADQRRKRINGASIVGYGSREHHRTKRKNSGQGQNDLNLRSHISVEWDSNQKRVVAKRE 60
MAADQRRKR+N A+++G SREH+R KRK + L HI++EWD N+ +VV+K+E
Sbjct: 1 MAADQRRKRMNSANVIGTSSREHYRAKRKKNASPDGALRSGDHITLEWDRNRSKVVSKKE 60
Query: 61 QIGISRRQMKPFVNFVSNDHKVLADVFTMPQEIFSLDNLSEVLSYEVWKTLLSENERNLL 120
Q+G+S R ++ FV+ V VLA V +P E F L+NLSEVLS EVW++ LS+ ERN L
Sbjct: 61 QVGLSFRHLREFVDVVPPRRNVLAQVCPVPHETFQLENLSEVLSNEVWRSCLSDGERNYL 120
Query: 121 MQFLPSGLEPHHAVEELLSGSNFQFGNPLLKWGASLCLGDLHPDMIVDRELHLKAENRAY 180
QFLP G++ V+ LL G NF FGNP L WG ++C G HPD IV RE L+A+ R Y
Sbjct: 121 RQFLPEGVDVEQVVQALLDGENFHFGNPSLDWGTAVCSGKAHPDQIVSREECLRADKRRY 180
Query: 181 YSQLYNYHNDMLGFLSKLKERWKSCKDPEKEFFQKI-RRSKHDEKKMPSNLNESRIFDRD 239
YS L YH D++ +L LKE+W+SCKDPEK+ + + RS+ ++ + +
Sbjct: 181 YSNLEKYHQDIIDYLQTLKEKWESCKDPEKDIVKMMWGRSRGGNAQVNGSC-------QG 233
Query: 240 ENVTSDSCSWDAEEKACSSDNQIS 263
S S SW+ ++K SSDN IS
Sbjct: 234 LTAASGSSSWNEDDKPDSSDNMIS 257
>AT5G13950.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins
in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56;
Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr5:4496196-4500206 REVERSE
LENGTH=939
Length = 939
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 169/264 (64%), Gaps = 8/264 (3%)
Query: 1 MAADQRRKRINGASIVGYGSREHHRTKRKNSGQGQNDLNLRSHISVEWDSNQKRVVAKRE 60
MAADQRRKR+N A+++G SREH+R KRK + L HI++EWD N+ +VV+K+E
Sbjct: 1 MAADQRRKRMNSANVIGTSSREHYRAKRKKNASPDGALRSGDHITLEWDRNRSKVVSKKE 60
Query: 61 QIGISRRQMKPFVNFVSNDHKVLADVFTMPQEIFSLDNLSEVLSYEVWKTLLSENERNLL 120
Q+G+S R ++ FV+ V VLA V +P E F L+NLSEVLS EVW++ LS+ ERN L
Sbjct: 61 QVGLSFRHLREFVDVVPPRRNVLAQVCPVPHETFQLENLSEVLSNEVWRSCLSDGERNYL 120
Query: 121 MQFLPSGLEPHHAVEELLSGSNFQFGNPLLKWGASLCLGDLHPDMIVDRELHLKAENRAY 180
QFLP G++ V+ LL G NF FGNP L WG ++C G HPD IV RE L+A+ R Y
Sbjct: 121 RQFLPEGVDVEQVVQALLDGENFHFGNPSLDWGTAVCSGKAHPDQIVSREECLRADKRRY 180
Query: 181 YSQLYNYHNDMLGFLSKLKERWKSCKDPEKEFFQKI-RRSKHDEKKMPSNLNESRIFDRD 239
YS L YH D++ +L LKE+W+SCKDPEK+ + + RS+ ++ + +
Sbjct: 181 YSNLEKYHQDIIDYLQTLKEKWESCKDPEKDIVKMMWGRSRGGNAQVNGSC-------QG 233
Query: 240 ENVTSDSCSWDAEEKACSSDNQIS 263
S S SW+ ++K SSDN IS
Sbjct: 234 LTAASGSSSWNEDDKPDSSDNMIS 257
>AT5G13950.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1). | chr5:4496196-4500206 REVERSE
LENGTH=954
Length = 954
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/272 (46%), Positives = 173/272 (63%), Gaps = 9/272 (3%)
Query: 1 MAADQRRKRINGASIVGYGSREHHRTKRKNSGQGQNDLNLRSHISVEWDSNQKRVVAKRE 60
MAADQRRKR+N A+++G SREH+R KRK + L HI++EWD N+ +VV+K+E
Sbjct: 1 MAADQRRKRMNSANVIGTSSREHYRAKRKKNASPDGALRSGDHITLEWDRNRSKVVSKKE 60
Query: 61 QIGISRRQMKPFVNFVSNDHKVLADVFTMPQEIFSLDNLSEVLSYEVWKTLLSENERNLL 120
Q+G+S R ++ FV+ V VLA V +P E F L+NLSEVLS EVW++ LS+ ERN L
Sbjct: 61 QVGLSFRHLREFVDVVPPRRNVLAQVCPVPHETFQLENLSEVLSNEVWRSCLSDGERNYL 120
Query: 121 MQFLPSGLEPHHAVEELLSGSNFQFGNPLLKWGASLCLGDLHPDMIVDRELHLKAENRAY 180
QFLP G++ V+ LL G NF FGNP L WG ++C G HPD IV RE L+A+ R Y
Sbjct: 121 RQFLPEGVDVEQVVQALLDGENFHFGNPSLDWGTAVCSGKAHPDQIVSREECLRADKRRY 180
Query: 181 YSQLYNYHNDMLGFLSKLKERWKSCKDPEKEFFQKIRRS-------KHDEKKMPSNLNES 233
YS L YH D++ +L LKE+W+SCKDPEK+ + + S K ++ S +
Sbjct: 181 YSNLEKYHQDIIDYLQTLKEKWESCKDPEKDIVKMMWGSVLYNFLFKRRTVEVRSRGGNA 240
Query: 234 RIFDRDENVT--SDSCSWDAEEKACSSDNQIS 263
++ + +T S S SW+ ++K SSDN IS
Sbjct: 241 QVNGSCQGLTAASGSSSWNEDDKPDSSDNMIS 272
>AT3G45830.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins
in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236;
Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes
- 131 (source: NCBI BLink). | chr3:16841277-16845173
FORWARD LENGTH=1298
Length = 1298
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 88 TMPQEIFSLDNLSEVLSYEVWKTLLSENERNLLMQFLP--SGLEPHHAVEELLSGSNFQF 145
++P E++ L +L ++LS +VW L+E ER L +LP L ++EL G NF F
Sbjct: 82 SIPFELYDLPSLEDILSVDVWNECLTEKERFSLSSYLPDVDQLTFMRTLKELFEGCNFHF 141
Query: 146 GNPLLKWGASLCLGDLHPD---MIVDRELHLKAENRAYYSQLYNYHNDMLGFLSKLKERW 202
G+P+ K L G P + R L L+ + +Y L YHNDM+ L + ++ W
Sbjct: 142 GSPVKKLFDMLKGGQCEPRNTLYLEGRSLFLRTK---HYHSLRKYHNDMVVNLCQTRDAW 198
Query: 203 KSCK 206
SCK
Sbjct: 199 TSCK 202
>AT1G02290.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G45830.1); Has 134 Blast hits to 134 proteins
in 37 species: Archae - 0; Bacteria - 0; Metazoa - 54;
Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:450646-451977 REVERSE
LENGTH=443
Length = 443
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 89 MPQEIFSLDNLSEVLSYEVWKTLLSENERNLLMQFLPSGLEPHH---AVEELLSGSNFQF 145
+P E++ L +L+ +LS E W +LL+E ER L FLP ++P ++ELL G+N F
Sbjct: 38 IPYELYDLPDLTGILSVETWNSLLTEEERFFLSCFLPD-MDPQTFSLTMQELLDGANLYF 96
Query: 146 GNPLLKWGASLCLGDLHPDMIVDRELHLKAENRAYYSQLYNYHNDMLGFLSKLKERW 202
GNP K+ +L G P + +E + + R YY L YH ++ ++++ W
Sbjct: 97 GNPEDKFYKNLLGGLFTPKVACFKEGVMFVKRRKYYYSLKFYHEKLIRTFTEMQRVW 153