Miyakogusa Predicted Gene

Lj0g3v0026819.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0026819.1 tr|D7LPX2|D7LPX2_ARALL Calcium ion binding
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,39.52,9e-18,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; PsbQ,Photosystem II PsbQ, oxygen evolving
comp,NODE_59878_length_1545_cov_30.031715.path2.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678 R...    94   5e-20
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...    75   3e-14
AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...    74   5e-14
AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II sub...    70   6e-13
AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4...    49   2e-06

>AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678
           REVERSE LENGTH=187
          Length = 187

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 92/148 (62%), Gaps = 9/148 (6%)

Query: 41  RRVGVLAAMASLILGGEGIFS---SQSAYASEF-AFMAP----DLTVEEAQNGAKVHAQD 92
           RR  VL  ++  ++     F    S SA A++F  F AP    + TVE AQ G + +A++
Sbjct: 37  RRRDVLLTISGTLIPQLFFFDRKRSSSANAADFFNFGAPPPEPERTVELAQEGLRKNAEN 96

Query: 93  LLQVRELLGAES-WKAAQRALRQSSALLRKDLYAIIQSKPGSERPQLRNLFSILFNNVSR 151
           + +++E++  +  WK   + LR+S++ +++D Y IIQ+KP  +RP  R+L+S LFN++++
Sbjct: 97  IKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRSLYSSLFNSITK 156

Query: 152 LDYAARDKDVPEIWRRYENIVVAVNDIL 179
           +DYAARD D  ++   Y NIV  ++DI 
Sbjct: 157 MDYAARDGDETKVLEYYINIVAILDDIF 184


>AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=224
          Length = 224

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 55  GGEGIFSSQSAYASEFAFMAPD------LTVEEAQNGAKVHAQDLLQVRELLGAESWKAA 108
           GG    +  S  A +FA    D      L   EA   AK  A+D++ V+ L+  ++W   
Sbjct: 90  GGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYV 149

Query: 109 QRALRQSSALLRKDLYAIIQSKPGSERPQLRNLFSILFNNVSRLDYAARDKDVPEIWRRY 168
           Q  LR  ++ LR DL  II SKP  E+  L++L + LF+ +  LDYAA+ K   +  + Y
Sbjct: 150 QNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYY 209

Query: 169 ENIVVAVNDILSIL 182
              V A+N++L+ L
Sbjct: 210 AETVSALNEVLAKL 223


>AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=223
          Length = 223

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query: 39  ISRRVGVLAAMASLILGGEGIFSSQSAYASEFAFMAPD------LTVEEAQNGAKVHAQD 92
           IS +VG   A +  + G     +  S  A +FA    D      L   EA   AK  A+D
Sbjct: 78  ISIKVGPPPAPSGGLPG-----TDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKD 132

Query: 93  LLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERPQLRNLFSILFNNVSRL 152
           ++ V+ L+  ++W   Q  LR  ++ LR DL  II SKP  E+  L++L + LF+ +  L
Sbjct: 133 IINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNL 192

Query: 153 DYAARDKDVPEIWRRYENIVVAVNDILSIL 182
           DYAA+ K   +  + Y   V A+N++L+ L
Sbjct: 193 DYAAKKKSPSQAEKYYAETVSALNEVLAKL 222


>AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
           subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230
          Length = 230

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 61/106 (57%)

Query: 77  LTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERP 136
           L+  EA   AK  A++++ V+  +  ++W   Q  LR  ++ LR DL  +I +KP  E+ 
Sbjct: 124 LSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQ 183

Query: 137 QLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILSIL 182
            L++L + LF  +  LDYAAR K  P+  + Y   V ++N++L+ L
Sbjct: 184 SLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229


>AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
           chr1:4839885-4840632 FORWARD LENGTH=190
          Length = 190

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 13/153 (8%)

Query: 39  ISRRVGVLAAMASLILGGEGIFSSQSAYASEF---------AFMAPDLTVEEAQNGAKVH 89
            +RR  + + +   ++GG    ++ SA A E           +  P L+ E+A    K  
Sbjct: 41  FTRRRTLTSLITFTVIGG----ATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQT 96

Query: 90  AQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERPQLRNLFSILFNNV 149
           A+ L  +RE+L   SW+     +R   A L +DL   +   P S R       + L  N+
Sbjct: 97  AEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENM 156

Query: 150 SRLDYAARDKDVPEIWRRYENIVVAVNDILSIL 182
           S LD+  R   V E +  YE  + ++++++  L
Sbjct: 157 SELDFYVRTPKVYESYLYYEKTLKSIDNVVEFL 189