Miyakogusa Predicted Gene

Lj0g3v0026789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0026789.1 Non Chatacterized Hit- tr|I3SWC8|I3SWC8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,60.62,0,no
description,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; LRAT,LRAT-like
domai,NODE_53624_length_845_cov_37.029587.path1.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02700.1 | Symbols:  | NC domain-containing protein-related |...   248   2e-66
AT5G06370.1 | Symbols:  | NC domain-containing protein-related |...   242   2e-64
AT4G00905.1 | Symbols:  | NC domain-containing protein-related |...   207   6e-54
AT1G01225.1 | Symbols:  | NC domain-containing protein-related |...   204   4e-53
AT5G16360.1 | Symbols:  | NC domain-containing protein-related |...   203   7e-53
AT5G16330.1 | Symbols:  | NC domain-containing protein-related |...   194   4e-50

>AT3G02700.1 | Symbols:  | NC domain-containing protein-related |
           chr3:581727-582813 REVERSE LENGTH=252
          Length = 252

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 160/244 (65%), Gaps = 15/244 (6%)

Query: 1   MRLLSNRIDRRQLNPGDHIYSWRQAYLYAHHGIYVGEGKVIHFTQRADPENGKGSCL--- 57
           M  LSN+I R  + PGDHIYSWRQAY+YAHHGIYVG G+V HFT+    E G G+ L   
Sbjct: 1   MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60

Query: 58  IISSLLSPTEIPCPTCGEQTRTDGVISSCMDCFLNGGDLYRFEYGVSGMFFLAKVRGGTC 117
           I+SS  +  + PCP CG+++   GVISSC++CFL GGDLY FEY VS   FLAK RGG C
Sbjct: 61  IVSSSHNHGDNPCPDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGVC 120

Query: 118 TLASSDPPEEVLHRAQFLLENGFGGYDVFKKNCEDFAIYCKTGLLVW----GQSGQVXXX 173
           T+ASSDPPEEV++RA FLL+NGFG Y+VFK NCEDFAIYCKTGLLV     G+SGQ    
Sbjct: 121 TIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVANTDVGRSGQAASI 180

Query: 174 XXXXXXXXWSPIRLMTTXXXXXXXXXXXXXXXXXXYCASRLSYDIGVRKDKIKIPVEK-I 232
                    SP+R +                    YC SRL  DIG+R D  K+PVE+ +
Sbjct: 181 VAAASVLLSSPLRFVA-------GFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVERLV 233

Query: 233 AEMA 236
           A++A
Sbjct: 234 ADVA 237


>AT5G06370.1 | Symbols:  | NC domain-containing protein-related |
           chr5:1947299-1948432 REVERSE LENGTH=259
          Length = 259

 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 153/248 (61%), Gaps = 16/248 (6%)

Query: 1   MRLLSNRIDRRQLNPGDHIYSWRQAYLYAHHGIYVGEGKVIHFTQRADPENGKGSCL--- 57
           M LLSNRIDR  L PGDHIYSWR AY+YAHHGIYVG+ +VIHFT+R   E G G+ L   
Sbjct: 1   MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQ-EVGTGTVLDLI 59

Query: 58  IISSLLSPTEIPCPTCGEQTRTDGVISSCMDCFLNGGDLYRFEYGVSGMFFLAKVRGGTC 117
           ++SS  S     CPTC       GV+SSC++CFL GG LYRFEY V+   FL K RGGTC
Sbjct: 60  LVSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTC 119

Query: 118 TLASSDPPEEVLHRAQFLLENGFGGYDVFKKNCEDFAIYCKTGLLV-----WGQSGQ-VX 171
           TLA +DP E V+HRA+ LL+NGFG YDVFK NCEDFAIYCKT LLV      GQSGQ V 
Sbjct: 120 TLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVS 179

Query: 172 XXXXXXXXXXWSPIRLMTTXXXXXXXXXXXXXXXXXXYCASRLSYDIGVRKDKIKIPVEK 231
                      +P+RL+TT                  YCASR + DIG+R D  K+  E 
Sbjct: 180 IIGGPIAAVLSTPMRLLTT------NVYGMAATAIGVYCASRYATDIGMRADVAKVEAED 233

Query: 232 IAEMAREG 239
           +      G
Sbjct: 234 LTRRLSSG 241


>AT4G00905.1 | Symbols:  | NC domain-containing protein-related |
           chr4:387865-389060 FORWARD LENGTH=263
          Length = 263

 Score =  207 bits (526), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 147/261 (56%), Gaps = 47/261 (18%)

Query: 1   MRLLSNRIDRRQLNPGDHIYSWRQAYLYAHHGIYVGEGKVIHFTQRADPENGKGSCLIIS 60
           M +L+N+++R +L PGDHIY++R  + Y+HHG++VG  KV+HF     PE+         
Sbjct: 1   MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHF----KPEH--------- 47

Query: 61  SLLSPT-------------------EIPCPT---CGEQTRTDGVISSCMDCFLNGGDLYR 98
           SL+SPT                   E PCPT   CG +    GV+ SC+DCFL  G LYR
Sbjct: 48  SLISPTLASSSSSSSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYR 107

Query: 99  FEYGVSGMFFLAKVRGGTCTLASSDPPEEVLHRAQFLLENGFGGYDVFKKNCEDFAIYCK 158
           F+YGVS   FL + RGGTCT A SDP + V+HRA  LL+NGFG Y+VF+ NCEDFA+YCK
Sbjct: 108 FDYGVSSSIFLTRFRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCK 167

Query: 159 TGLLVW-----GQSGQVXXXXXXXXXXXWS-PIRLMTTXXXXXXXXXXXXXXXXXXYCAS 212
           TGLL+      G+SGQ             S P+ L+                    YC S
Sbjct: 168 TGLLILDKNGVGRSGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGM------YCMS 221

Query: 213 RLSYDIGVRKDKIKIPVEKIA 233
           R + DIGVR D IK+PVE +A
Sbjct: 222 RYATDIGVRNDVIKVPVEDLA 242


>AT1G01225.1 | Symbols:  | NC domain-containing protein-related |
           chr1:96064-97242 FORWARD LENGTH=260
          Length = 260

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 140/239 (58%), Gaps = 13/239 (5%)

Query: 1   MRLLSNRIDRRQLNPGDHIYSWRQAYLYAHHGIYVGEGKVIHFTQRADPENGKGSCLIIS 60
           M LL+N+I+R +L PGDHIY++R  + Y+HHGI+VG  KV+HF    +P +   S  I S
Sbjct: 1   MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPMDSSTS-SISS 59

Query: 61  SLLSPTEIPCPTCGEQTRTDGVISSCMDCFLNGGDLYRFEYGVSGMFFLAKVRGGTCTLA 120
           S         P CG +    GV+ SC+DCFL  G LY FEYGVS   FL KVRGGTCT A
Sbjct: 60  SSSEDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCTTA 119

Query: 121 SSDPPEEVLHRAQFLLENGFGGYDVFKKNCEDFAIYCKTGLLVW-----GQSGQVXXXXX 175
            SD  + V+HRA +LL+NGFG YD+FK NCEDFA+YCKTGLL+      G+SGQ      
Sbjct: 120 QSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQASSIVG 179

Query: 176 XXXXXXW-SPIRLMTTXXXXXXXXXXXXXXXXXXYCASRLSYDIGVRKDKIKIPVEKIA 233
                   SP +L+                    YC SR + DIGVR D IK+ VE +A
Sbjct: 180 APLAALLSSPFKLLIP------SPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLA 232


>AT5G16360.1 | Symbols:  | NC domain-containing protein-related |
           chr5:5355236-5356195 REVERSE LENGTH=283
          Length = 283

 Score =  203 bits (517), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 120/271 (44%), Positives = 147/271 (54%), Gaps = 36/271 (13%)

Query: 1   MRLLSNRIDRRQLNPGDHIYSWRQAYLYAHHGIYVGEGKVIHFTQRADPENGKGSCL-II 59
           M L S++I R  L PGDHIYSWR AY+Y+HHG+YVG+ KVIHFT+    E G G+ L  I
Sbjct: 1   MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60

Query: 60  SSLLSPT----EIPCPTCGEQTRTDGVISSCMDCFLNGGDLYRFEYGVSGMFFLAKVRGG 115
             +  P     +  C  CG+Q+   GVISSC+DCFL GG+L+ FEY  S   FLAK RGG
Sbjct: 61  IDISIPNHGRRDKKCIDCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK-RGG 119

Query: 116 TCTLASSDPPEEVLHRAQFLL-ENGFGGYDVFKKNCEDFAIYCKTGLLV------WGQSG 168
           TCT+ASSDP +EV+ RA+FLL +NGFG YD+   NCEDFAIYCKTGL V      +G SG
Sbjct: 120 TCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVLSVATKFGCSG 179

Query: 169 QVXXXXXXXXXXXWSPIRL-----------------------MTTXXXXXXXXXXXXXXX 205
           Q             +   L                        +T               
Sbjct: 180 QANSVSAAGGVVALTLKVLGVKKKSSSGHEDDSVVSVVNQFISSTVKYVVPGIGGLALAE 239

Query: 206 XXXYCASRLSYDIGVRKDKIKIPVEKIAEMA 236
              YC  RL YDIGVRKD  K+ VE++    
Sbjct: 240 YGNYCIGRLFYDIGVRKDACKVSVEELVAFV 270


>AT5G16330.1 | Symbols:  | NC domain-containing protein-related |
           chr5:5346163-5346977 REVERSE LENGTH=242
          Length = 242

 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/244 (46%), Positives = 142/244 (58%), Gaps = 32/244 (13%)

Query: 3   LLSNRIDRRQLNPGDHIYSWRQAYLYAHHGIYVGEGKVIHFTQRADPENGKGSCL--IIS 60
            +SN+I R +L PGDHIYSWR AY+Y+HHGIY+G+ KVIHFT     E G G+ L  I+ 
Sbjct: 11  FISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKIVV 70

Query: 61  SLL--SPTEIPCPTCGEQTRTDGVISSCMDCFLNGGDLYRFEYGVSGMFFLAKVRGGTCT 118
           S++     + PC  C EQ   +GVISSC+DCFL GG++Y FEY VS   F+AK R GTCT
Sbjct: 71  SVIPNHKGDNPCSNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPRRGTCT 130

Query: 119 LASSDPPEEVLHRAQF-LLENGFGGYDVFKKNCEDFAIYCKTGLL-----VWGQSGQVXX 172
           +A SDP +EV+ RA++ LL NGFG Y   + NCEDFAIYCKT LL     V G+ GQ   
Sbjct: 131 IAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLVGKDYVLGRGGQASS 190

Query: 173 XXXXXXXXXWSPIRLMTTXXXXXXXXXXXXXXXXXXYCASRLSYDIGVRKDKIKIPVEKI 232
                     SP                          A +L  DIG+RKD IK+PVE +
Sbjct: 191 VSAAAWLAQLSPFGSK----------------------AIQLFADIGMRKDAIKVPVESL 228

Query: 233 AEMA 236
              A
Sbjct: 229 VPRA 232