Miyakogusa Predicted Gene

Lj0g3v0024609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0024609.1 tr|G7JU86|G7JU86_MEDTR Cytosine-specific
methyltransferase OS=Medicago truncatula GN=MTR_4g113420
PE,32.82,2e-17,CHROMO_2,Chromo domain/shadow; BAH,Bromo adjacent
homology (BAH) domain; Chromo domain-like,Chromo d,CUFF.1384.1
         (692 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19020.1 | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-...   382   e-106
AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-...   246   3e-65
AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:303...   240   3e-63

>AT4G19020.1 | Symbols: CMT2 | chromomethylase 2 |
           chr4:10414526-10420936 FORWARD LENGTH=1295
          Length = 1295

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/424 (47%), Positives = 280/424 (66%), Gaps = 19/424 (4%)

Query: 258 LDDNLPIKKCK------TSSALTDKSMNNKNISSFFGDPIPDDEAQKRWGWRYELKDKKC 311
           LD N P K  K      T +A+ ++  N ++I  F G+P+  +EAQ+RW WRYELK++K 
Sbjct: 491 LDLNNPTKSTKRKGKRVTRTAVQEQ--NKRSICFFIGEPLSCEEAQERWRWRYELKERKS 548

Query: 312 KNQQFXXXXXXXXXXXXXXXCHYAQANIGNCIFTLGDCAFIEGEDGQKHVGKIVEFFQTT 371
           K++                 CHY+QA +    F+LGD A+I+GE+ + HVG+IVEFF+TT
Sbjct: 549 KSRG-QQSEDDEDKIVANVECHYSQAKVDGHTFSLGDFAYIKGEEEETHVGQIVEFFKTT 607

Query: 372 DSQNYFRVQWFYRIQDTVIQDEGDFHDKRRLFYSSIMNDNLIECILAKVNVTHIKPRVNM 431
           D ++YFRVQWFYR  DT+++ +   HDKRRLFYS++MNDN ++C+++KV V  + PRV +
Sbjct: 608 DGESYFRVQWFYRATDTIMERQATNHDKRRLFYSTVMNDNPVDCLISKVTVLQVSPRVGL 667

Query: 432 NLTSNSPSDFYYDMEYCVDYSTFRNIPTDNPANITELSAPATHESLSTEAS-SITKSPPS 490
              S   SD+Y+DMEYCV+YSTF+ +   NP   +E       + + TE++ SI K    
Sbjct: 668 KPNSIK-SDYYFDMEYCVEYSTFQTL--RNP-KTSENKLECCADVVPTESTESILKKKSF 723

Query: 491 SELHKTELELLDLYSGCGGMSTGLCFGAKTSSVNLVARWAVDSDRSASESLRLNHSATYV 550
           S     EL +LDLYSGCGGMSTGL  GAK S V++V +WAVD + +A +SL+LNH  T V
Sbjct: 724 S----GELPVLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQV 779

Query: 551 RNESAEDFLELVKEWEKLCKRYNVSGAQRKLPSRS-NSSAEKKQVNSQAHDTASDDEIEV 609
           RN++A DFL+L+KEW+KLCKRY  +  QR    RS NS+ E    +S + D +  +E EV
Sbjct: 780 RNDAAGDFLQLLKEWDKLCKRYVFNNDQRTDTLRSVNSTKETSGSSSSSDDDSDSEEYEV 839

Query: 610 SRLVDICYSDPNETGKRGLYFKVRWKGHGASEDSWEPIENLRKCKESIQDFVRKGVKSKI 669
            +LVDIC+ D ++TGK GL FKV WKG+ + ED+WE  E L  C+++I++FV  G KSKI
Sbjct: 840 EKLVDICFGDHDKTGKNGLKFKVHWKGYRSDEDTWELAEELSNCQDAIREFVTSGFKSKI 899

Query: 670 LPRP 673
           LP P
Sbjct: 900 LPLP 903


>AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 |
           chr1:26248496-26253519 REVERSE LENGTH=839
          Length = 839

 Score =  246 bits (629), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 224/409 (54%), Gaps = 21/409 (5%)

Query: 281 KNISSFFGDPIPDDEAQKRWGWRY---ELKDKKCKNQQFXXXXXXXXXXXXXXXCHYAQA 337
           K+++ F  +PIP+ EA+  W  RY   E++  K  +++                CHY +A
Sbjct: 45  KHVARFLDEPIPESEAKSTWPDRYKPIEVQPPKASSRK--KTKDDEKVEIIRARCHYRRA 102

Query: 338 NIGN-CIFTLGDCAFIE-GEDGQKHVGKIVEFFQTTDSQNYFRVQWFYRIQDTVIQDEGD 395
            +    I+ L D A+++ GE     + KI+E F+  + + YF  +WFYR  DTV+++   
Sbjct: 103 IVDERQIYELNDDAYVQSGEGKDPFICKIIEMFEGANGKLYFTARWFYRPSDTVMKEFEI 162

Query: 396 FHDKRRLFYSSIMNDNLIECILAKVNVTHIKPRVNMNLTSNSPS----DFYYDMEYCVDY 451
              K+R+F+S I + N +  +  K+N+  I   +N N     P+    DF+ DM Y + Y
Sbjct: 163 LIKKKRVFFSEIQDTNELGLLEKKLNILMIP--LNENTKETIPATENCDFFCDMNYFLPY 220

Query: 452 STFRNIPTDNPANITELSAPATHESLSTEASSITKSPPSS---ELHKTELELLDLYSGCG 508
            TF  I  +    I+E S  ++   +   A++I++    S   E HK +  LLDLYSGCG
Sbjct: 221 DTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQETEGHK-KATLLDLYSGCG 279

Query: 509 GMSTGLCFGAKTSSVNLVARWAVDSDRSASESLRLNHSATYVRNESAEDFLELVKEWEKL 568
            MSTGLC GA+ S +NLV +WAVD +  A +SL+ NH  T VRN +AEDFL L+KEWEKL
Sbjct: 280 AMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPETNVRNMTAEDFLFLLKEWEKL 339

Query: 569 CKRY---NVSGAQRKLPSRSNSSAEKKQVNSQAHDTASDDEI-EVSRLVDICYSDPNETG 624
           C  +   N   ++        ++ E  +  S+  +   D E+  V ++V I +  P +  
Sbjct: 340 CIHFSLRNSPNSEEYANLHGLNNVEDNEDVSEESENEDDGEVFTVDKIVGISFGVPKKLL 399

Query: 625 KRGLYFKVRWKGHGASEDSWEPIENLRKCKESIQDFVRKGVKSKILPRP 673
           KRGLY KVRW  +  S D+WEPIE L  C+  I++FV+ G KS ILP P
Sbjct: 400 KRGLYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEFVKLGYKSGILPLP 448


>AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 |
           chr1:30342394-30346831 FORWARD LENGTH=791
          Length = 791

 Score =  240 bits (612), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 210/401 (52%), Gaps = 27/401 (6%)

Query: 286 FFGDPIPDDEAQKRWGWRYELKDKKC----KNQQFXXXXXXXXXXXXXXXCHYAQANIGN 341
           F G P+   E+  RW  RY+ K  K     K                   CH+ +A +  
Sbjct: 19  FAGKPMSVVESTIRWPHRYQSKKTKLQAPTKKPANKGGKKEDEEIIKQAKCHFDKALVDG 78

Query: 342 CIFTLGDCAFIEGEDGQ-KHVGKIVEFFQTTDSQNYFRVQWFYRIQDTVIQDEGDFHDKR 400
            +  L D  ++ G  G+ K + K++E F+  D   Y R +W+YR +DT+I+        +
Sbjct: 79  VLINLNDDVYVTGLPGKLKFIAKVIELFEADDGVPYCRFRWYYRPEDTLIERFSHLVQPK 138

Query: 401 RLFYSSIMNDNLIECILAKVNVTHIK-PRVNMNLTSN--SPSDFYYDMEYCVDYSTFRNI 457
           R+F S+  NDN + CI +KVN+  +  P++   +      P D+YYDM+Y V Y  F   
Sbjct: 139 RVFLSNDENDNPLTCIWSKVNIAKVPLPKITSRIEQRVIPPCDYYYDMKYEVPYLNF--- 195

Query: 458 PTDNPANITELSAPATHESLSTEASSITKSPPSSELHKTELELLDLYSGCGGMSTGLCFG 517
                      ++       S+  SS +       LHK E  LLDLYSGCG MSTG C G
Sbjct: 196 -----------TSADDGSDASSSLSSDSALNCFENLHKDEKFLLDLYSGCGAMSTGFCMG 244

Query: 518 AKTSSVNLVARWAVDSDRSASESLRLNHSATYVRNESAEDFLELVKEWEKLCKRYNVSGA 577
           A  S V L+ +W+VD ++ A +SL+LNH  T VRNE+AEDFL L+KEW++LC+++++  +
Sbjct: 245 ASISGVKLITKWSVDINKFACDSLKLNHPETEVRNEAAEDFLALLKEWKRLCEKFSLVSS 304

Query: 578 QRKLPSRSNSSAEKKQVNSQAHDTASDDEI-----EVSRLVDICYSDPNETGKRGLYFKV 632
              + S S    E+ + N    + ++  E+     EV + + I + DP  TG++ L   V
Sbjct: 305 TEPVESISELEDEEVEENDDIDEASTGAELEPGEFEVEKFLGIMFGDPQGTGEKTLQLMV 364

Query: 633 RWKGHGASEDSWEPIENLRKCKESIQDFVRKGVKSKILPRP 673
           RWKG+ +S D+WEP   L  CKE ++++V  G KS +LP P
Sbjct: 365 RWKGYNSSYDTWEPYSGLGNCKEKLKEYVIDGFKSHLLPLP 405