Miyakogusa Predicted Gene

Lj0g3v0024529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0024529.1 tr|B9MUB0|B9MUB0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_917368 PE=4
SV=1,70.49,0,seg,NULL; PRLI-INTERACTING FACTOR L,NULL;
COBW-RELATED,NULL; Cobalamin synthesis protein cobW C-term,CUFF.1380.1
         (424 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80480.1 | Symbols: PTAC17 | plastid transcriptionally active...   412   e-115
AT1G15730.1 | Symbols:  | Cobalamin biosynthesis CobW-like prote...   409   e-114
AT1G26520.1 | Symbols:  | Cobalamin biosynthesis CobW-like prote...   229   4e-60

>AT1G80480.1 | Symbols: PTAC17 | plastid transcriptionally active 17
           | chr1:30258272-30260570 REVERSE LENGTH=444
          Length = 444

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/439 (49%), Positives = 283/439 (64%), Gaps = 18/439 (4%)

Query: 1   MATTYMALRTTAKTLLGVAHSPVPHSCHPLSLIRTLHSFVSRHPSFHHPYSGTFSF-FFR 59
           +ATT+++  T  ++     +     +   LS  R     V   PSF   YS       F 
Sbjct: 9   IATTFLSF-TAPRSSAAFNYRFSSAAVSVLSRPRATTVSVRTTPSFF--YSPVVRRQRFS 65

Query: 60  GMASASAPNHNLDEAASLAPDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEF 119
            +++++    + D    + PDNR+PAT+ITGFLGSGKTTLLNHILT  HGKRIAVIENEF
Sbjct: 66  SVSASATQTEDSDVTTKIPPDNRIPATIITGFLGSGKTTLLNHILTRDHGKRIAVIENEF 125

Query: 120 GEVDIDGSLVASHSSVSEDIIMVNNGCLCCTVRGDLVKMLLELARKKRDVIDHIVIETTG 179
           GEVDIDGSLVAS S  +EDI+M+NNGCLCCTVRGDLV+M+ EL   K+   DHIVIETTG
Sbjct: 126 GEVDIDGSLVASKSIGAEDIVMLNNGCLCCTVRGDLVRMIGELVNTKKGKFDHIVIETTG 185

Query: 180 LAKPGPVIETFCSDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADR 239
           LA P P+I+TF ++E +   VKLDGVVTLVD KHA  HL+EVKP  VVNEAVEQ+AYADR
Sbjct: 186 LANPAPIIQTFYAEEEIFNDVKLDGVVTLVDAKHARLHLDEVKPEGVVNEAVEQIAYADR 245

Query: 240 IILNKIDLVSESELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLQRIESDVHG 299
           II+NK DLV E+EL ++ ++IK IN MAQ+ + K+G+VD+D+VLG+GG+DL+RIES V+ 
Sbjct: 246 IIVNKTDLVGEAELGSVVQRIKTINSMAQMTRTKYGNVDLDYVLGIGGFDLERIESSVNE 305

Query: 300 ECPSSASHQXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXAEGTLDLDEV 345
           +                                                  EG+LDL++ 
Sbjct: 306 DDKGDHHDHDHDHHHDHNHDHDHHHHDGHDHHHHSHDHTHDPGVSSVSIVCEGSLDLEKA 365

Query: 346 DDWLERLVEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRINKLVF 405
           + WL  L+ E+ ED+YRMKG+LSV   ++R+V QGVH I  GS  + W  EE+R+NK+VF
Sbjct: 366 NMWLGTLLMERSEDIYRMKGLLSVHTMEERFVFQGVHDIFQGSPDRLWGREEERVNKIVF 425

Query: 406 IGRNLDETTLRKGFRGCLV 424
           IG+NL+   L KGF+ CL+
Sbjct: 426 IGKNLNREELEKGFKACLI 444


>AT1G15730.1 | Symbols:  | Cobalamin biosynthesis CobW-like protein
           | chr1:5407535-5409937 REVERSE LENGTH=448
          Length = 448

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 283/446 (63%), Gaps = 28/446 (6%)

Query: 1   MATTYMALRTTAKTLLGVAHSPVPHSCHPLSLIRTLHSFVSRHPSFHHP--YSGTFSFFF 58
           +ATT++A       ++  A++ + H      L     S  ++  SF+    YS +   F 
Sbjct: 9   IATTFLAF------IVPRANTSLNHRFASARLSTATVSLRTKSSSFYSAALYSDSRRRFH 62

Query: 59  RGMASASA-----PNHNLDEAASLAPDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIA 113
             +AS S+          D A+ + PDNR+PAT+ITGFLGSGKTTLLNHILT  HGKRIA
Sbjct: 63  SAVASDSSLAVVDDEDIFDVASEILPDNRIPATIITGFLGSGKTTLLNHILTGDHGKRIA 122

Query: 114 VIENEFGEVDIDGSLVASHSSVSEDIIMVNNGCLCCTVRGDLVKMLLELARKKRDVIDHI 173
           VIENEFGEVDIDGSLVA+ ++ +EDI+M+NNGCLCCTVRGDLV+M+ E+ + K+   DHI
Sbjct: 123 VIENEFGEVDIDGSLVAAQTAGAEDIMMLNNGCLCCTVRGDLVRMISEMVQTKKGRFDHI 182

Query: 174 VIETTGLAKPGPVIETFCSDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQ 233
           VIETTGLA P P+I+TF +++ +   VKLDGVVTLVD KHA  HL+EVKP   VNEAVEQ
Sbjct: 183 VIETTGLANPAPIIQTFYAEDEIFNDVKLDGVVTLVDAKHARLHLDEVKPEGYVNEAVEQ 242

Query: 234 VAYADRIILNKIDLVSESELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLQRI 293
           +AYADRII+NK DLV E EL ++ ++IK IN MA +K+ K+G VD+D+VLG+GG+DL+RI
Sbjct: 243 IAYADRIIVNKTDLVGEPELASVMQRIKTINSMAHMKRTKYGKVDLDYVLGIGGFDLERI 302

Query: 294 ESDVHGECPSSASHQXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXAEG 338
           ES V+ E                                                   EG
Sbjct: 303 ESSVNEEEKEDREGHDDHHHGHDCHDHHNEHEHEHEHEHHHSHDHTHDPGVGSVSIVCEG 362

Query: 339 TLDLDEVDDWLERLVEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEK 398
            LDL++ + WL  L+ ++ ED+YRMKG+LSV   D+R+V QGVH I +GS  + W  +E 
Sbjct: 363 DLDLEKANMWLGALLYQRSEDIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDET 422

Query: 399 RINKLVFIGRNLDETTLRKGFRGCLV 424
           R NK+VFIG+NL+   L  GFR CL+
Sbjct: 423 RTNKIVFIGKNLNREELEMGFRACLI 448


>AT1G26520.1 | Symbols:  | Cobalamin biosynthesis CobW-like protein
           | chr1:9163448-9165594 REVERSE LENGTH=374
          Length = 374

 Score =  229 bits (583), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 210/372 (56%), Gaps = 29/372 (7%)

Query: 61  MASASAPNHNLDEAASLAPDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFG 120
           MA    P+ ++ +  S +    V  +VITG+LG+GK+TL+N+IL  +HGKRIAVI NEFG
Sbjct: 20  MAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKRIAVILNEFG 79

Query: 121 E-VDIDGSLV--ASHSSVSEDIIMVNNGCLCCTVRGDLVKMLLELARKKRDVIDHIVIET 177
           E + ++ +++      ++ E+ + + NGC+CCTV+  LV+ L +L ++K D +DHI++ET
Sbjct: 80  EEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRK-DRLDHILLET 138

Query: 178 TGLAKPGPVIETFCSDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYA 237
           TGLA P P+      D+ +   VKLD +VT+VD K+    LNE +      EA  Q+A+A
Sbjct: 139 TGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPEAFNQIAFA 198

Query: 238 DRIILNKIDLVSESELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYD---LQRIE 294
           D II+NK+DL+S+ E + L K+I  IN +A + ++    VD+  +L    YD   + R+E
Sbjct: 199 DTIIMNKVDLISQEESDELEKEIHSINSLANVIRSVRCQVDLSNILNCQAYDSTHVSRLE 258

Query: 295 S--DVHGECPSSASHQXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTLDLDEVDDWLERL 352
           S  + +    ++  H                                ++LD+V  WLE +
Sbjct: 259 SLLEANKSLTTTDLHDSGVRTLCISEPQ------------------PINLDKVRLWLEEI 300

Query: 353 VEEKGE--DLYRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRINKLVFIGRNL 410
           + +K    D+YR K VLS+  SDQ ++LQ V  I +    ++W  EE R NK+VFIG  L
Sbjct: 301 LWDKKSEMDVYRCKAVLSIQNSDQMHILQAVRDIYEIVPARKWSEEENRTNKIVFIGHKL 360

Query: 411 DETTLRKGFRGC 422
           DE  LR G R C
Sbjct: 361 DEEVLRSGLRDC 372