Miyakogusa Predicted Gene

Lj0g3v0024429.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0024429.2 tr|D7LAT4|D7LAT4_ARALL Zinc finger family protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_,60.49,9e-19,
,CUFF.1376.2
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19910.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    98   1e-21
AT3G63530.2 | Symbols: BB, BB2 | RING/U-box superfamily protein ...    59   6e-10
AT3G63530.1 | Symbols: BB, BB2 | RING/U-box superfamily protein ...    59   6e-10

>AT3G19910.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:6926497-6929324 FORWARD LENGTH=340
          Length = 340

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 1   MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHG 60
           +++  + SQDA +++D D LSYEELLAL +IVG ESRGL  DTIA LPS +YK G +Q+G
Sbjct: 224 LEDESHTSQDAWDEMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEGDNQNG 283

Query: 61  SNDSCVICRLDYEDVLRYLLL 81
           +N+SCVICRLDYED    +LL
Sbjct: 284 TNESCVICRLDYEDDEDLILL 304


>AT3G63530.2 | Symbols: BB, BB2 | RING/U-box superfamily protein |
           chr3:23456407-23457787 REVERSE LENGTH=248
          Length = 248

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 12  REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--DQHGSNDSCVICR 69
           ++D+D D ++YEEL+ L E VG ESRGL  + I  LP+ KYK GS   +  + + CVIC+
Sbjct: 142 QDDIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQ 201

Query: 70  LDYE 73
           L Y+
Sbjct: 202 LKYK 205


>AT3G63530.1 | Symbols: BB, BB2 | RING/U-box superfamily protein |
           chr3:23456407-23457787 REVERSE LENGTH=248
          Length = 248

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 12  REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--DQHGSNDSCVICR 69
           ++D+D D ++YEEL+ L E VG ESRGL  + I  LP+ KYK GS   +  + + CVIC+
Sbjct: 142 QDDIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQ 201

Query: 70  LDYE 73
           L Y+
Sbjct: 202 LKYK 205