Miyakogusa Predicted Gene

Lj0g3v0023769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0023769.1 Non Chatacterized Hit- tr|B6TYT6|B6TYT6_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,53.47,0.000000000003,seg,NULL; coiled-coil,NULL,CUFF.1329.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15880.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...   297   8e-81

>AT5G15880.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:5185788-5187461 FORWARD LENGTH=348
          Length = 348

 Score =  297 bits (760), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 172/343 (50%), Positives = 219/343 (63%), Gaps = 13/343 (3%)

Query: 1   MAGLLAWAADVVXXXXXX---XXXSIPIIWSEDQRKYVWELDQKAXXXXXXXXXXXXXXX 57
           MAGLLAWAADVV             IP++++E+Q+KYV EL +KA               
Sbjct: 1   MAGLLAWAADVVGKNGKEGDDEKDRIPLVFTEEQQKYVDELGRKATNLSRSIQDLRLRLP 60

Query: 58  XXXXXQSLPHLHAHSLASNNALTLQLNSHSTTRQQAQLREVTLKEENAAFENAISNCENK 117
                Q LP LHAHSLASN ALTLQL+SHS TR+QA +RE TL EEN+A+ENAIS CE K
Sbjct: 61  PPDISQRLPDLHAHSLASNAALTLQLDSHSATREQAHMREQTLLEENSAYENAISTCETK 120

Query: 118 IKEKLQEKDLLQRRLEEMDETEKKLRTDQDSVQQLQASQDAGKSWNSGAWEEETKTNSKA 177
           I+EK  E D L R+L+E++  E+ L+T+QD+ Q   AS DA +S +S     +   N K 
Sbjct: 121 IEEKRNEADSLLRKLKELEAVEENLKTEQDNAQ---ASLDARQSKSSSETVIQPDGNGKD 177

Query: 178 GSDADVDVEAAKSAMLEELEQRKKDLNSMEDTVRELEKKWAVLQENAHKQPSPVQREKTL 237
           G+D     EA KS MLE+LE +K D++ ME+ V++LE+ WAV+QE A KQPSP QREKTL
Sbjct: 178 GAD----TEAMKSFMLEKLESKKNDMSLMEEKVQDLERSWAVIQERALKQPSPAQREKTL 233

Query: 238 DKQLHGLIEQLAVKQAQAEDLFSDIHLKEMELERLNGLWRRMXXXXXXXXXXXXXFGKSS 297
           DKQLH LIEQLA KQAQAE +  +IHL EMELERLN LWRR              F +++
Sbjct: 234 DKQLHSLIEQLAAKQAQAEGIVGEIHLNEMELERLNNLWRRYESFNVEGNAARNRFKRTN 293

Query: 298 SDKLYGLSDYE--GHQRLPYHSAGKTESQQRLMLLSCRVLLAV 338
           SD+ +  SD+E  GH  LPY SA +  +Q RLM L    ++ +
Sbjct: 294 SDREF-TSDHEVDGHSYLPYSSATRNGTQTRLMYLRSAFVVYI 335