Miyakogusa Predicted Gene

Lj0g3v0022569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0022569.1 Non Chatacterized Hit- tr|I1HKF6|I1HKF6_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,45.22,2e-18,seg,NULL,CUFF.1263.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58575.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Sgf11, tra...   103   3e-23

>AT5G58575.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Sgf11,
           transcriptional regulation (InterPro:IPR013246); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:23674399-23675224
           FORWARD LENGTH=181
          Length = 181

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 55/81 (67%)

Query: 27  IIVDVASECHRVARXXXXXXXXXXXXXXXXXAQARVRVADPSNNNEANGKYLVDIFGQTH 86
           +I DVASECHRVAR                  +AR ++ADPSNN E N KY+VDIFGQTH
Sbjct: 26  VIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIADPSNNLETNTKYVVDIFGQTH 85

Query: 87  PPVADEIFECMNCGRSIMAGR 107
           PPVA E+F CMNCGR I+AGR
Sbjct: 86  PPVASEVFNCMNCGRQIVAGR 106