Miyakogusa Predicted Gene

Lj0g3v0022429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0022429.1 Non Chatacterized Hit- tr|C4MBJ8|C4MBJ8_ENTHI
Putative uncharacterized protein OS=Entamoeba
histolyt,28.64,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; CTP_transf_1,Phosphatidate
cytidylyltrans,NODE_13735_length_1648_cov_68.501823.path1.1
         (315 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58560.1 | Symbols:  | Phosphatidate cytidylyltransferase fam...   324   5e-89
AT5G04490.1 | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:12...   206   1e-53

>AT5G58560.1 | Symbols:  | Phosphatidate cytidylyltransferase family
           protein | chr5:23670513-23672570 FORWARD LENGTH=307
          Length = 307

 Score =  324 bits (831), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 148/244 (60%), Positives = 194/244 (79%)

Query: 72  SATMLHHDPFVGNIYATAISGVVALSFLRLWEETATRGLFDQKLNRKLVHVSIGLAFIFC 131
           +A M   +  + ++ A  ++ +VA S L  W E   RG+FDQKL RKLVH++IGL F+ C
Sbjct: 64  AAVMFPENSVLSDVCAFGVTSIVAFSCLGFWGEIGKRGIFDQKLIRKLVHINIGLVFMLC 123

Query: 132 WPLYSDDKWASLFAALIPGVNILRMLFIGLGILKDEGTVKSMSRFGDYRELLKGPLYYAA 191
           WPL+S     +LFA+L+PG+NI+RML +GLG+  DEGT+KSMSR GD RELLKGPLYY  
Sbjct: 124 WPLFSSGIQGALFASLVPGLNIVRMLLLGLGVYHDEGTIKSMSRHGDRRELLKGPLYYVL 183

Query: 192 TITLAAVLYWRTSPIAIAAICNLCAGDGMADIVGRRFGGKKIPYNRNKSYAGSVAMASAG 251
           +IT A + YW++SPIAIA ICNLCAGDGMADIVGRRFG +K+PYN+NKS+AGS+ MA+AG
Sbjct: 184 SITSACIYYWKSSPIAIAVICNLCAGDGMADIVGRRFGTEKLPYNKNKSFAGSIGMATAG 243

Query: 252 FLASVGYMWYFSSFGFMEGSWELALRFLIVSVVTAVVESLPISTELDDNLTVPLTSILVG 311
           FLASV YM+YF+SFG++E S  + LRFL++S+ +A+VESLPIST++DDNLT+ LTS L G
Sbjct: 244 FLASVAYMYYFASFGYIEDSGGMILRFLVISIASALVESLPISTDIDDNLTISLTSALAG 303

Query: 312 SIVF 315
            ++F
Sbjct: 304 FLLF 307


>AT5G04490.1 | Symbols: VTE5 | vitamin E pathway gene 5 |
           chr5:1279867-1281587 FORWARD LENGTH=304
          Length = 304

 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 142/215 (66%), Gaps = 1/215 (0%)

Query: 102 WEETATRGLFDQKLNRKLVHVSIGLAFIFCWPLYSDDKWASLFAALIPGVNILRMLFIGL 161
           +E    R +  Q L+RKLVH+  GL F+  WP++S    A  FAA +P VN LR++  GL
Sbjct: 88  FESLTKRNVIQQSLSRKLVHILSGLLFVLAWPIFSGSTEARYFAAFVPLVNGLRLVINGL 147

Query: 162 GILKDEGTVKSMSRFGDYRELLKGPLYYAATITLAAVLYWRTSPIAIAAICNLCAGDGMA 221
            I  +   +KS++R G   ELLKGPL+Y   +  +AV +WR SPI + ++  +C GDG+A
Sbjct: 148 SISPNSMLIKSVTREGRAEELLKGPLFYVLALLFSAVFFWRESPIGMISLAMMCGGDGIA 207

Query: 222 DIVGRRFGGKKIPYNRNKSYAGSVAMASAGFLASVGYMWYFSSFGFMEGSWELAL-RFLI 280
           DI+GR+FG  KIPYN  KS+AGS++M   GF  S+  ++Y+SS G++  +WE  L R  +
Sbjct: 208 DIMGRKFGSTKIPYNPRKSWAGSISMFIFGFFISIALLYYYSSLGYLHMNWETTLQRVAM 267

Query: 281 VSVVTAVVESLPISTELDDNLTVPLTSILVGSIVF 315
           VS+V  VVESLPI+ +LDDN++VPL +IL   + F
Sbjct: 268 VSMVATVVESLPITDQLDDNISVPLATILAAYLSF 302