Miyakogusa Predicted Gene

Lj0g3v0021389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0021389.1 Non Chatacterized Hit- tr|D8RIM9|D8RIM9_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,46.21,6e-17,Clathrin_lg_ch,Clathrin light chain; seg,NULL;
coiled-coil,NULL; PROTEIN BINDING / PROTEIN TRANSPORT,CUFF.1189.1
         (285 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51890.1 | Symbols:  | Clathrin light chain protein | chr3:19...   202   2e-52
AT2G40060.1 | Symbols:  | Clathrin light chain protein | chr2:16...   194   4e-50
AT2G20760.1 | Symbols:  | Clathrin light chain protein | chr2:89...   174   8e-44

>AT3G51890.1 | Symbols:  | Clathrin light chain protein |
           chr3:19249686-19250890 REVERSE LENGTH=258
          Length = 258

 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 143/222 (64%), Gaps = 30/222 (13%)

Query: 13  DDGVFLGYDPRLQSQRFDS-FSNFDADSVKDS---AGDDAFSSQAVPETPSPPPIYSAGA 68
           D G F  Y+ R QSQRFDS FSNFD+   K+S    GD    S   PET SPP I S   
Sbjct: 25  DGGNFTAYESRFQSQRFDSSFSNFDSQPEKESDLPCGD----SSPRPETQSPPSINS--- 77

Query: 69  GFAPYSPEQNGEGAGGGFVASDGPILPPPADFAPEEGFALREWRRENAIRLEEKEKKENE 128
                            F  ++  ILPPP+    EEGFALREWRR NA+RLEEKEK+E E
Sbjct: 78  -----------------FDDTNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKE 120

Query: 129 TRLQILEEADEYKIGFYRKREVNVENTKASNREREKLFLASGEKFHAEADKNYWKAIGEL 188
              QILE A++YK  FY KR V +EN K  NRE+EK FL + EKF+AEADKN WKAI EL
Sbjct: 121 MVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAEL 180

Query: 189 IPHEVPAIQKRGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQI 230
           IP EVP I+ RG  +K+K  +I VIQGPKPGKPTDLSRMRQ+
Sbjct: 181 IPREVPVIENRG--NKKKTATITVIQGPKPGKPTDLSRMRQV 220


>AT2G40060.1 | Symbols:  | Clathrin light chain protein |
           chr2:16726564-16728001 FORWARD LENGTH=258
          Length = 258

 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 153/230 (66%), Gaps = 27/230 (11%)

Query: 11  FEDDGVFLGYDPRLQS-------QRFDSFSNFDADSVKDSAGDDAFSSQAVPETPSPPPI 63
           FEDD   +  D   +S          DSFS FD     + + DD F++      PS    
Sbjct: 4   FEDDSFVILNDDASESVPVSGSFDATDSFSAFDGSLQVEDSVDDVFAA------PS---- 53

Query: 64  YSAGAGFAPYSPEQNGEGAGGGFVASDGPILPPPADFAPEEGFALREWRRENAIRLEEKE 123
               + +  YS   NG+G  G     DGPILPPP++   +EGFALREWRR+NAI+LEEKE
Sbjct: 54  ----SDYGAYS---NGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKE 106

Query: 124 KKENETRLQILEEADEYKIGFYRKREVNVENTKASNREREKLFLASGEKFHAEADKNYWK 183
           K+E E   QI+EEAD+YK  F++K EV  EN KA+NRE+EKL+L + EKF+AE+ KNYWK
Sbjct: 107 KREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWK 166

Query: 184 AIGELIPHEVPAIQK-RGKKDKE--KKPSIIVIQGPKPGKPTDLSRMRQI 230
           AI EL+P EVP I+K RGKK+++  KKP++ VIQGPKPGKPTDL+RMRQI
Sbjct: 167 AIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQI 216


>AT2G20760.1 | Symbols:  | Clathrin light chain protein |
           chr2:8943279-8945108 REVERSE LENGTH=338
          Length = 338

 Score =  174 bits (440), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 110/146 (75%), Gaps = 2/146 (1%)

Query: 86  FVASDGPILPPPADFAPEEGFALREWRRENAIRLEEKEKKENETRLQILEEADEYKIGFY 145
             ASDGPILP P +   EEGF  REWRR N I LEEKEKKE E R QI+ EA+++K  FY
Sbjct: 90  IFASDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFY 148

Query: 146 RKREVNVENTKASNREREKLFLASGEKFHAEADKNYWKAIGELIPHEVPAIQ-KRGKKDK 204
            KR+  +E  K  NRE+EKL+ A+ EKFH E DK+YWKAI ELIP EVP I+ KRGKKD 
Sbjct: 149 EKRDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDP 208

Query: 205 EKKPSIIVIQGPKPGKPTDLSRMRQI 230
           +KKPS+ VIQGPKPGKPTDL RMRQI
Sbjct: 209 DKKPSVNVIQGPKPGKPTDLGRMRQI 234