Miyakogusa Predicted Gene

Lj0g3v0021379.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0021379.1 tr|A9S5F6|A9S5F6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74828
,40,4e-18,Starch binding domain,Carbohydrate binding module family 20;
seg,NULL; Starch-binding domain-like,Ca,CUFF.1183.1
         (545 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01260.2 | Symbols:  | Carbohydrate-binding-like fold | chr5:...   148   1e-35
AT5G01260.1 | Symbols:  | Carbohydrate-binding-like fold | chr5:...   147   2e-35
AT2G04270.5 | Symbols: RNEE/G | RNAse E/G-like | chr2:1474961-14...    51   2e-06
AT5G26570.2 | Symbols: PWD, OK1, ATGWD3 | catalytics;carbohydrat...    51   2e-06
AT5G26570.1 | Symbols: PWD, OK1, ATGWD3 | catalytics;carbohydrat...    51   2e-06
AT2G04270.1 | Symbols: RNEE/G | RNAse E/G-like | chr2:1474961-14...    49   8e-06

>AT5G01260.2 | Symbols:  | Carbohydrate-binding-like fold |
           chr5:105367-107045 FORWARD LENGTH=385
          Length = 385

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 1/116 (0%)

Query: 86  KFVRVAFQLQKDCDFGEQFLIVGDHPILGS-WEPTEALPMTWSDGHVWTIELDMPVGESI 144
           K VRV FQL+K+C FGE F IVGD P+ G  W+P  ALP+ WSDG+VWT++LD+PVG  +
Sbjct: 85  KTVRVRFQLRKECVFGEHFFIVGDDPVFGGLWDPETALPLNWSDGNVWTVDLDLPVGRLV 144

Query: 145 LFKFILKGKEGDIIWQPGSDRVINTWETMNKIIVFEDWENAELQEIIEEDQFSQSN 200
            FK +LK + G+I+WQPG +R + TWET   I + EDW+NA+LQ +IEED    +N
Sbjct: 145 EFKLLLKAQTGEILWQPGPNRALETWETNKTIRICEDWDNADLQMMIEEDFVPYTN 200


>AT5G01260.1 | Symbols:  | Carbohydrate-binding-like fold |
           chr5:105367-106488 FORWARD LENGTH=306
          Length = 306

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 1/116 (0%)

Query: 86  KFVRVAFQLQKDCDFGEQFLIVGDHPILGS-WEPTEALPMTWSDGHVWTIELDMPVGESI 144
           K VRV FQL+K+C FGE F IVGD P+ G  W+P  ALP+ WSDG+VWT++LD+PVG  +
Sbjct: 85  KTVRVRFQLRKECVFGEHFFIVGDDPVFGGLWDPETALPLNWSDGNVWTVDLDLPVGRLV 144

Query: 145 LFKFILKGKEGDIIWQPGSDRVINTWETMNKIIVFEDWENAELQEIIEEDQFSQSN 200
            FK +LK + G+I+WQPG +R + TWET   I + EDW+NA+LQ +IEED    +N
Sbjct: 145 EFKLLLKAQTGEILWQPGPNRALETWETNKTIRICEDWDNADLQMMIEEDFVPYTN 200


>AT2G04270.5 | Symbols: RNEE/G | RNAse E/G-like |
           chr2:1474961-1480014 FORWARD LENGTH=1001
          Length = 1001

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 13/163 (7%)

Query: 32  SLRFRNDRKGSNFWLLKLVQNKGYYPVHALPAKTQVDLEAAEPQVAQSEQINESKFVRVA 91
           S  F +  +G  F L          P  A+P +  + + + +P               V 
Sbjct: 32  SYMFSHVERGKTFRLTLCFGVSRLRPRSAIPLRFLLSVFSEQPPS------RLKGLCEVV 85

Query: 92  FQLQKDCDFGEQFLIVGDHPILGSWEPTEALPMTWSDG-HVWTIELDMPVGESILFKFIL 150
           + ++ D    E   + GD   LGSWEP  A+ M  ++  + W  ++ +  G +  + ++L
Sbjct: 86  WIVEADLAANEHLYVTGDPSTLGSWEPDCAISMYPTENDNEWEAKVKIASGVNFRYNYLL 145

Query: 151 K---GKEGDIIWQPGSDRVINTWETMN---KIIVFEDWENAEL 187
           K   G   D+IW+PG    ++   ++N   KII+ + W +  +
Sbjct: 146 KAGYGSSSDVIWRPGPQFSLSVPSSVNQDRKIIIRDSWMSMSI 188


>AT5G26570.2 | Symbols: PWD, OK1, ATGWD3 | catalytics;carbohydrate
           kinases;phosphoglucan, water dikinases |
           chr5:9261580-9266463 FORWARD LENGTH=865
          Length = 865

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 88  VRVAFQLQKDCDFGEQFLIVGDHPILGSWEPTEALPMTWSDGHVWTIELDMPVGESILFK 147
           VR+  +L    +FG+   + G    +GSW+     P+ WS+ + W  EL++  G+ + +K
Sbjct: 74  VRLNVRLDHQVNFGDHVAMFGSAKEIGSWKKKS--PLNWSE-NGWVCELELDGGQVLEYK 130

Query: 148 FILKGKEGDIIWQPGSDRVI 167
           F++   +G + W+ G +RV+
Sbjct: 131 FVIVKNDGSLSWESGDNRVL 150


>AT5G26570.1 | Symbols: PWD, OK1, ATGWD3 | catalytics;carbohydrate
           kinases;phosphoglucan, water dikinases |
           chr5:9261580-9267526 FORWARD LENGTH=1196
          Length = 1196

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 88  VRVAFQLQKDCDFGEQFLIVGDHPILGSWEPTEALPMTWSDGHVWTIELDMPVGESILFK 147
           VR+  +L    +FG+   + G    +GSW+     P+ WS+ + W  EL++  G+ + +K
Sbjct: 74  VRLNVRLDHQVNFGDHVAMFGSAKEIGSWKKKS--PLNWSE-NGWVCELELDGGQVLEYK 130

Query: 148 FILKGKEGDIIWQPGSDRVINTWETMNKIIV 178
           F++   +G + W+ G +RV+    + N  +V
Sbjct: 131 FVIVKNDGSLSWESGDNRVLKVPNSGNFSVV 161


>AT2G04270.1 | Symbols: RNEE/G | RNAse E/G-like |
           chr2:1474961-1480014 FORWARD LENGTH=996
          Length = 996

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 87  FVRVAFQLQKDCDFGEQFLIVGDHPILGSWEPTEALPMTWSDG-HVWTIELDMPVGESIL 145
              V + ++ D    E   + GD   LGSWEP  A+ M  ++  + W  ++ +  G +  
Sbjct: 76  LCEVVWIVEADLAANEHLYVTGDPSTLGSWEPDCAISMYPTENDNEWEAKVKIASGVNFR 135

Query: 146 FKFILK---GKEGDIIWQPGSDRVINTWETMN---KIIVFEDWENAEL 187
           + ++LK   G   D+IW+PG    ++   ++N   KII+ + W +  +
Sbjct: 136 YNYLLKAGYGSSSDVIWRPGPQFSLSVPSSVNQDRKIIIRDSWMSMSI 183