Miyakogusa Predicted Gene

Lj0g3v0021209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0021209.1 tr|A9TM45|A9TM45_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_196332,39.68,0.000000000000005, ,CUFF.1170.1
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58920.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...   161   2e-40

>AT5G58920.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:23793239-23794014 FORWARD LENGTH=162
          Length = 162

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/162 (53%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 1   MFPKRFQDPKSGFILLSSMRAKKYMNKIGLEGEDYHFFKQVGKALLCTYAILGALWLSNE 60
           M  K+FQ  K+G   L SM A  Y+ K+GL  +D  F+KQVGKALLCTY I G  W+ NE
Sbjct: 1   MVRKQFQQAKTGIEALKSMDANNYLKKVGLGRDDMFFWKQVGKALLCTYTIFGMAWIYNE 60

Query: 61  NSTMDWGKLKPWPKEELVQDQLSRIREFLHLGD-KGPEEFTDKGLMIGATSGLKGVDESD 119
            S + W  LKP PKEE     L   REF + GD +  E+F  KG MIG   G KG+ ES+
Sbjct: 61  TSPLGWWTLKPRPKEERELAHLYERREFPYPGDTEAMEDFVAKGGMIGTAIGPKGIVESE 120

Query: 120 KDAENNQKELQSKKFDQEAQNLWLKMRNEVIAELKEKGFDVE 161
            +A+N QKE++ KKFD+EAQ LWL+MRNEVI EL+EKG ++E
Sbjct: 121 GEADNYQKEMEKKKFDKEAQKLWLRMRNEVITELQEKGHNLE 162