Miyakogusa Predicted Gene

Lj0g3v0020859.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0020859.1 tr|G7L4G6|G7L4G6_MEDTR F-box OS=Medicago
truncatula GN=MTR_7g060940 PE=4 SV=1,33.04,1e-17,seg,NULL;
F_box_assoc_1: F-box protein interaction domain,F-box associated
interaction domain,CUFF.1159.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    64   1e-10
AT1G33530.1 | Symbols:  | F-box family protein | chr1:12159884-1...    50   1e-06
AT5G10340.1 | Symbols:  | F-box family protein | chr5:3253122-32...    50   2e-06

>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 31/237 (13%)

Query: 45  EEDSSDFLSRYQPPLFTEKNAMEILACLPLKSVIRFRSLYALWDSPISDTLSYVRRG--S 102
           +E + +  S +  PL   +   EIL  LP+KS+ RF+ + + W S IS+TL  ++     
Sbjct: 2   DETTREMFSPHNLPL---EMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALIL 58

Query: 103 NPRVLAVSGVAPFNVSSLSIRYFLK----------APTNVDEPHVICTLETRHSVVGSCN 152
                  S  +P+ V + S RY LK          +   V E          + VVG+C+
Sbjct: 59  ETSKATTSTKSPYGVITTS-RYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCH 117

Query: 153 GVVCLMASSSFSSYQDCTWVRFLNPATRAMTPKSPKVVASVNLGACPYVDNFGFGFDSLS 212
           G+VC       S Y         NP  +     S   + + +   C  V  +GFG+D   
Sbjct: 118 GLVCFHVDYDKSLY-------LWNPTIKLQQRLSSSDLETSD-DEC--VVTYGFGYDESE 167

Query: 213 STYKVV-LLPDHKRISMRIKVFSMGNSSWRETTFSAPQRI---NHSRFGVHLKGNVN 265
             YKVV LL    ++ +  K++S     WR  T S P  +   + SR G+++ G +N
Sbjct: 168 DDYKVVALLQQRHQVKIETKIYSTRQKLWRSNT-SFPSGVVVADKSRSGIYINGTLN 223


>AT1G33530.1 | Symbols:  | F-box family protein |
           chr1:12159884-12161314 FORWARD LENGTH=441
          Length = 441

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 44/190 (23%)

Query: 67  EILACLPLKSVIRFRSLYALWDSPI-SDTLS-----YVRRGSNPRVLAVSGVAPFNVSSL 120
           EIL  LP+K ++R +S+   W S I SD L+      + +    + + ++ V      S+
Sbjct: 104 EILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKIT-VERSTSKSI 162

Query: 121 SIRYFLKA----PTNVDEPHVICTLETRHSVVGSCNGVVCLMASSSFSSYQ-DCTWVRFL 175
            I++F +       N D   ++        V GSCNG+VC+        Y+ D  ++  L
Sbjct: 163 CIKFFSRRSGMNAINSDSDDLL-------RVPGSCNGLVCV--------YELDSVYIYLL 207

Query: 176 NP---ATRAMTPKSPKVVASVNLGACPYVDNFGFGFDSLSSTYKVVLLPDHKRISMRIKV 232
           NP    TR +TP     ++             GFG D ++ TYKV++L    R+     V
Sbjct: 208 NPMTGVTRTLTPPRGTKLS------------VGFGIDVVTGTYKVMVLYGFDRVG--TVV 253

Query: 233 FSMGNSSWRE 242
           F +  + WR+
Sbjct: 254 FDLDTNKWRQ 263


>AT5G10340.1 | Symbols:  | F-box family protein |
           chr5:3253122-3255045 FORWARD LENGTH=445
          Length = 445

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 57/242 (23%)

Query: 67  EILACLPLKSVIRFRSLYALWDSPISDTLSYVRR--------GSNPRVLAVSGVAPF--- 115
            I+  L +K++++F+S+   W S I       R+          +P VL VS   P    
Sbjct: 77  HIMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGDPHVLLVSLYDPCARQ 136

Query: 116 ---NVSSL-SIRYFL--------KAPTN-VDEPHVICTLETRHSVVGSCNGVVCLMASSS 162
              ++SS  ++R FL        + PT   D+ + +C          SC+G++CL     
Sbjct: 137 QDPSISSFEALRTFLVESSAASVQIPTPWEDKLYFVCN--------TSCDGLICL----- 183

Query: 163 FSSYQDCTWVRFLNPATR--AMTPKSPKVVASVNLG--------ACPYVDNFGFGFDSLS 212
           FS Y+  + V  +NP TR     PK    + + + G        ACP     GFG D +S
Sbjct: 184 FSFYELPSIV--VNPTTRWHRTFPKCNYQLVAADKGERHECFKVACP---TPGFGKDKIS 238

Query: 213 STYKVVLLPDHKRISMRIK-----VFSMGNSSWRETTFSAPQRINHSRFGVHLKGNVNFL 267
            TYK V L +   + +  K     VF    ++WR    ++P  I H++  V++ G++++ 
Sbjct: 239 GTYKPVWLYNSAELDLNDKPTTCEVFDFATNAWRYVFPASPHLILHTQDPVYVDGSLHWF 298

Query: 268 AS 269
            +
Sbjct: 299 TA 300