Miyakogusa Predicted Gene

Lj0g3v0020849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0020849.1 Non Chatacterized Hit- tr|H3GQR2|H3GQR2_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,60.98,1e-18,DUF382,Domain of unknown function DUF382; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL,CUFF.1158.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21660.1 | Symbols:  | proline-rich spliceosome-associated (P...   110   2e-25
AT4G21660.2 | Symbols:  | proline-rich spliceosome-associated (P...   110   2e-25

>AT4G21660.1 | Symbols:  | proline-rich spliceosome-associated (PSP)
           family protein | chr4:11506259-11509772 REVERSE
           LENGTH=584
          Length = 584

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 6/82 (7%)

Query: 1   MQPKM---VIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPDMLSHELKEA 57
           MQPKM    IDYQVLHDAFFKYQTKPKL++LG+LY EGKEFEVKLRE KP  LS++LKEA
Sbjct: 260 MQPKMGKMDIDYQVLHDAFFKYQTKPKLSALGDLYFEGKEFEVKLRETKPGFLSNDLKEA 319

Query: 58  PGMPEGAPPNYEEPVFNTKHWG 79
            GMPEGAPP +   + N + +G
Sbjct: 320 LGMPEGAPPPW---LINMQRYG 338


>AT4G21660.2 | Symbols:  | proline-rich spliceosome-associated (PSP)
           family protein | chr4:11506259-11509772 REVERSE
           LENGTH=598
          Length = 598

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 6/82 (7%)

Query: 1   MQPKM---VIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPDMLSHELKEA 57
           MQPKM    IDYQVLHDAFFKYQTKPKL++LG+LY EGKEFEVKLRE KP  LS++LKEA
Sbjct: 274 MQPKMGKMDIDYQVLHDAFFKYQTKPKLSALGDLYFEGKEFEVKLRETKPGFLSNDLKEA 333

Query: 58  PGMPEGAPPNYEEPVFNTKHWG 79
            GMPEGAPP +   + N + +G
Sbjct: 334 LGMPEGAPPPW---LINMQRYG 352