Miyakogusa Predicted Gene

Lj0g3v0020069.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0020069.1 Non Chatacterized Hit- tr|F6GUK3|F6GUK3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.48,0,RNA-binding domain, RBD,NULL; RNA recognition motif,RNA
recognition motif domain; seg,NULL; no descr,CUFF.1192.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa...   171   3e-43
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik...   170   9e-43
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik...   169   1e-42
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicin...   162   2e-40
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact...   117   8e-27
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact...   116   2e-26
AT2G21440.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    63   2e-10
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human...    62   3e-10
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human...    62   3e-10
AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zi...    60   1e-09
AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    59   3e-09
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |...    55   3e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa...    55   4e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa...    55   5e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa...    55   5e-08
AT5G54580.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   5e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ...    54   8e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ...    54   8e-08
AT5G09880.1 | Symbols:  | Splicing factor, CC1-like | chr5:30816...    54   2e-07
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM...    53   2e-07
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F...    53   2e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein...    52   3e-07
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein...    52   3e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein...    52   3e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-...    52   3e-07
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin...    52   4e-07
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    52   4e-07
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3...    52   5e-07
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu...    52   5e-07
AT3G13224.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   7e-07
AT3G13224.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   1e-06
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    50   1e-06
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    50   1e-06
AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   1e-06
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1...    50   1e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |...    50   1e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation...    50   1e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation...    50   1e-06
AT4G13860.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   2e-06
AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   2e-06
AT1G07350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   5e-06
AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   7e-06
AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   7e-06

>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
           factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
          Length = 262

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 78/90 (86%), Positives = 85/90 (94%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           DLPTSLLVRNLRHDCR EDLRRPF QFGP+KDIYLP+DYYTG PRGFGF+QF+DPADAA+
Sbjct: 34  DLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAE 93

Query: 104 AKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           AK+ MDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 94  AKHQMDGYLLLGRELTVVFAEENRKKPTEM 123


>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
           splicing factor 33 | chr1:20630676-20632695 FORWARD
           LENGTH=287
          Length = 287

 Score =  170 bits (430), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 85/90 (94%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           DLPTSLLVRNLRHDCR EDLR+ F QFGP+KDIYLP+DYYTG PRGFGFVQF+DPADAAD
Sbjct: 33  DLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAAD 92

Query: 104 AKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           AK+HMDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 93  AKHHMDGYLLLGRELTVVFAEENRKKPTEM 122


>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
           splicing factor 33 | chr1:20630676-20632567 FORWARD
           LENGTH=220
          Length = 220

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 85/90 (94%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           DLPTSLLVRNLRHDCR EDLR+ F QFGP+KDIYLP+DYYTG PRGFGFVQF+DPADAAD
Sbjct: 33  DLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAAD 92

Query: 104 AKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           AK+HMDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 93  AKHHMDGYLLLGRELTVVFAEENRKKPTEM 122


>AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
           factor 33 | chr1:20630676-20632695 FORWARD LENGTH=300
          Length = 300

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 85/102 (83%), Gaps = 12/102 (11%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQ------------PRGFG 91
           DLPTSLLVRNLRHDCR EDLR+ F QFGP+KDIYLP+DYYTG             PRGFG
Sbjct: 33  DLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFG 92

Query: 92  FVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           FVQF+DPADAADAK+HMDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 93  FVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEM 134


>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
           30 | chr3:20561024-20563502 FORWARD LENGTH=262
          Length = 262

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 68/85 (80%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           LLVRN+  DCRPE+LR PF +FGP++D+Y+P+DYY+GQPRGF FV+FVD  DA +A+  M
Sbjct: 49  LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108

Query: 109 DGQILLGRELTVVFAEENRKKPTEM 133
           + +   GRE+TVV A E+RK+P EM
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEM 133


>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
           28 | chr5:6268925-6271158 REVERSE LENGTH=236
          Length = 236

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 68/88 (77%)

Query: 46  PTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAK 105
           P+ LL+RNL  D RP DLR  F +FGPLKDIYLP++YYTG+PRGFGFV++    DAA+A 
Sbjct: 46  PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105

Query: 106 YHMDGQILLGRELTVVFAEENRKKPTEM 133
             M+ +++ GRE+ +VFAEENRK P EM
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEM 133


>AT2G21440.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:9173712-9179065 REVERSE LENGTH=1003
          Length = 1003

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           L++RNL    +P D++  F   G + D+++PK++ TG P+GF FV+F    DAA+A    
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 109 DGQILLGRELTVVFA 123
           +G +   R + V +A
Sbjct: 393 NGHMFGKRPIAVDWA 407


>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
           splicing factor SC35 | chr5:25681849-25683553 REVERSE
           LENGTH=303
          Length = 303

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + D+++P+D  TG  RGF FV++    +A  A   
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRVVDGREITVQFAK 93


>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
           splicing factor SC35 | chr5:25681849-25683553 REVERSE
           LENGTH=303
          Length = 303

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + D+++P+D  TG  RGF FV++    +A  A   
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRVVDGREITVQFAK 93


>AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zinc
           finger domains containing protein | chr3:3232636-3233421
           FORWARD LENGTH=261
          Length = 261

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           ++L V NL       D+   F  FG +  + + KD +T Q RG  FV +V   DAA A  
Sbjct: 57  STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query: 107 HMDGQILLGRELTVVFAEEN 126
            MD +IL GR+LTV  A +N
Sbjct: 117 SMDAKILNGRKLTVSIAADN 136


>AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2555034-2555829 REVERSE LENGTH=143
          Length = 143

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           L +  L      + L+  F  FG + ++ +  D  +G+ RGFGFV F +  DA  AK  M
Sbjct: 43  LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102

Query: 109 DGQILLGRELTVVFAEE 125
           DG+ LLGR L + FA E
Sbjct: 103 DGKGLLGRPLRISFALE 119


>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
           chr1:26999606-27001850 FORWARD LENGTH=461
          Length = 461

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           + V N+ +D   E LR   G+ GP+    L  D  TG+P+G+GF ++ D   A  A+ ++
Sbjct: 11  VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query: 109 DGQILLGRELTVVFAEENR 127
               + GR+L V FAE ++
Sbjct: 71  QSYEINGRQLRVDFAENDK 89


>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
           circadian rhythm, and RNA binding 1 |
           chr4:18274166-18274958 REVERSE LENGTH=92
          Length = 92

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 38/72 (52%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
             V  L      EDL+R F QFG + D  +  D  +G+ RGFGFV F D     DA   M
Sbjct: 8   CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67

Query: 109 DGQILLGRELTV 120
           +G+ L GR +TV
Sbjct: 68  NGKELDGRVITV 79


>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
           circadian rhythm, and RNA binding 1 |
           chr4:18274166-18274958 REVERSE LENGTH=126
          Length = 126

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%)

Query: 50  LVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHMD 109
            V  L      EDL+R F QFG + D  +  D  +G+ RGFGFV F D     DA   M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 110 GQILLGRELTV 120
           G+ L GR +TV
Sbjct: 69  GKELDGRVITV 79


>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
           circadian rhythm, and RNA binding 1 |
           chr4:18274166-18274958 REVERSE LENGTH=169
          Length = 169

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%)

Query: 50  LVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHMD 109
            V  L      EDL+R F QFG + D  +  D  +G+ RGFGFV F D     DA   M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 110 GQILLGRELTV 120
           G+ L GR +TV
Sbjct: 69  GKELDGRVITV 79


>AT5G54580.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22171332-22172656 FORWARD LENGTH=156
          Length = 156

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T+L V  L      E LR  F QFG + D  +  D  +G  +GFGFV++    D+A    
Sbjct: 56  TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115

Query: 107 HMDGQILLGRELTVVFAEENR 127
            MDG+ L G    V+FAE  R
Sbjct: 116 GMDGKFLDG---WVIFAEYAR 133


>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
           protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
          Length = 136

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + + L V  L        L++ F  FG + +  +  D  TG+ RGFGFV F     A +A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 105 KYHMDGQILLGRELTVVFAEENRKKP 130
              MDG+ L GR++ V  A E    P
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAP 118


>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
           protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
          Length = 136

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + + L V  L        L++ F  FG + +  +  D  TG+ RGFGFV F     A +A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 105 KYHMDGQILLGRELTVVFAEENRKKP 130
              MDG+ L GR++ V  A E    P
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAP 118


>AT5G09880.1 | Symbols:  | Splicing factor, CC1-like |
           chr5:3081646-3085179 REVERSE LENGTH=527
          Length = 527

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           L V NL  +     LR+ F  FGP++ + LP D  TGQ +GFGF+QFV    +  A+  +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326

Query: 109 DGQI-LLGRELTV 120
           +G++ + GR + V
Sbjct: 327 NGKLEIAGRTIKV 339


>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
           (RRM/RBD/RNP motifs) family protein with retrovirus zinc
           finger-like domain | chr3:19834557-19836507 REVERSE
           LENGTH=284
          Length = 284

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T L V  L    R  DL R F ++G ++D+ + +DY         FV+F DP DA DA+Y
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFSDPRDADDARY 62

Query: 107 HMDGQILLGRELTV 120
           ++DG+   G  +TV
Sbjct: 63  YLDGRDFDGSRITV 76


>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
           FORWARD LENGTH=177
          Length = 177

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
            +L V  L  +     L   F  FG +KD+  P D    + R FGFV F++  DA+ A  
Sbjct: 13  NTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72

Query: 107 HMDGQILLGRELTVVFA 123
           +MDG  L GR LTV +A
Sbjct: 73  NMDGAELYGRVLTVNYA 89


>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
           | chr4:8021314-8022065 FORWARD LENGTH=129
          Length = 129

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 36/76 (47%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + T L +  L        LR  F  FG + D  +  D  TG+ RGFGFV F D   A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 105 KYHMDGQILLGRELTV 120
              MDG+ L GR + V
Sbjct: 93  ISEMDGKELNGRHIRV 108


>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
           | chr4:8021314-8022065 FORWARD LENGTH=144
          Length = 144

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 36/76 (47%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + T L +  L        LR  F  FG + D  +  D  TG+ RGFGFV F D   A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 105 KYHMDGQILLGRELTV 120
              MDG+ L GR + V
Sbjct: 93  ISEMDGKELNGRHIRV 108


>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
           | chr4:8021314-8022065 FORWARD LENGTH=153
          Length = 153

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 36/76 (47%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + T L +  L        LR  F  FG + D  +  D  TG+ RGFGFV F D   A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 105 KYHMDGQILLGRELTV 120
              MDG+ L GR + V
Sbjct: 93  ISEMDGKELNGRHIRV 108


>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
           RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
           LENGTH=158
          Length = 158

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 36/76 (47%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + T L +  L        LR  F  FG + D  +  D  TG+ RGFGFV F D   A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 105 KYHMDGQILLGRELTV 120
              MDG+ L GR + V
Sbjct: 93  ISEMDGKELNGRHIRV 108


>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
           arginine/serine-rich zinc knuckle-containing protein 33
           | chr2:15670372-15672331 REVERSE LENGTH=290
          Length = 290

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T L V  L    R  DL R F ++G ++D+ + +DY         FV+F DP DA DA++
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFGDPRDADDARH 62

Query: 107 HMDGQILLGRELTVVFA 123
           ++DG+   G  +TV F+
Sbjct: 63  YLDGRDFDGSRITVEFS 79


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
           protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T++ V+NL      +DL+  FG++G +    + KD   G+ +GFGFV F +  DAA A  
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVE 273

Query: 107 HMDGQILLGRELTVVFAEENRKKPTEM 133
            ++G     +E  V  A++  ++ TE+
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETEL 300


>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
           | chr5:20452677-20453965 REVERSE LENGTH=289
          Length = 289

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           + V NL  D     L R F + G + D  +  D  TG+ RGFGFVQ  +  +   A   +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268

Query: 109 DGQILLGRELTVVFAEENRKK 129
           DGQ L GR + V  AEE  ++
Sbjct: 269 DGQNLEGRAIKVNVAEERTRR 289


>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
           ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
           LENGTH=427
          Length = 427

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           +L V  L ++     ++R F  +GP+K ++L  D  T +P+G+ F++++   D   A   
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198

Query: 108 MDGQILLGRELTV 120
            DGQ + GR + V
Sbjct: 199 ADGQKIDGRRVLV 211


>AT3G13224.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4254848-4256621 FORWARD LENGTH=358
          Length = 358

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 46  PTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAK 105
           P  + +  L  D       + FG++G + D  + +D +TGQPRGFGF+ F DP+   D K
Sbjct: 18  PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS-VVD-K 75

Query: 106 YHMDGQILLGRELTV 120
              D  ++ G+++ +
Sbjct: 76  VIEDTHVINGKQVEI 90


>AT3G13224.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4254848-4256014 FORWARD LENGTH=231
          Length = 231

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 46  PTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAK 105
           P  + +  L  D       + FG++G + D  + +D +TGQPRGFGF+ F DP+   D K
Sbjct: 18  PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS-VVD-K 75

Query: 106 YHMDGQILLGRELTV 120
              D  ++ G+++ +
Sbjct: 76  VIEDTHVINGKQVEI 90


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T++ V+NL  +   ++L++ FG++G +    + KD  +G  R FGFV FV P  AA A  
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 297

Query: 107 HMDGQILLGRELTVV 121
            M+G I LG ++  V
Sbjct: 298 KMNG-ISLGEDVLYV 311


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T++ V+NL  +   ++L++ FG++G +    + KD  +G  R FGFV FV P  AA A  
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 297

Query: 107 HMDGQILLGRELTVV 121
            M+G I LG ++  V
Sbjct: 298 KMNG-ISLGEDVLYV 311


>AT3G46020.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:16912511-16913250 REVERSE LENGTH=102
          Length = 102

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           +   L V  L      + LR+ F  FG +K+  L +D  T +P+GFGF+ F    DA  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 105 KYHMDGQILLGRELTVVFAE 124
              +DG+I+ GR + V  A+
Sbjct: 65  LKSLDGKIVDGRLIFVEVAK 84


>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T++ V+NL      E+L + FG+FG      + +D   G+ +GFGFV F +  DAA A  
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVD 282

Query: 107 HMDGQILLGRELTVVFAEENRKKPTEM 133
            ++G+    +E  V  A++  ++ TE+
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETEL 309


>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T++ V+NL      E+L + FG+FG      + +D   G+ +GFGFV F +  DAA A  
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVD 282

Query: 107 HMDGQILLGRELTVVFAEENRKKPTEM 133
            ++G+    +E  V  A++  ++ TE+
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETEL 309


>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
           initiation factor 3G1 | chr3:3578536-3580366 FORWARD
           LENGTH=294
          Length = 294

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           S+ V NL  D R  DL   F  FG +  +Y+  D  TG  RGFGFV FV   DA  A   
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273

Query: 108 MDG 110
           ++G
Sbjct: 274 LNG 276


>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
           initiation factor 3G1 | chr3:3578536-3580366 FORWARD
           LENGTH=321
          Length = 321

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           S+ V NL  D R  DL   F  FG +  +Y+  D  TG  RGFGFV FV   DA  A   
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300

Query: 108 MDG 110
           ++G
Sbjct: 301 LNG 303


>AT4G13860.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:8022601-8023162 FORWARD LENGTH=87
          Length = 87

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           + T + V NL      + LR  F  +G + D  + +D YT + RGFGFV +   ++A  A
Sbjct: 1   MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60

Query: 105 KYHMDGQILLGRELTV 120
              MDG+ L GR ++V
Sbjct: 61  VSGMDGKELNGRRVSV 76


>AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:16225483-16227423 FORWARD LENGTH=423
          Length = 423

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           D    + V  L  +    +  + FG++G + D  + KD  TGQPRGFGFV + D +   D
Sbjct: 39  DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSS-VVD 97

Query: 104 AKYHMDGQILLGRELTV 120
            K   D  I++G+++ +
Sbjct: 98  -KVIQDNHIIIGKQVEI 113


>AT1G07350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2257732-2260101 REVERSE LENGTH=382
          Length = 382

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 37/77 (48%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
            SL V  L H     DL   F + G + D++L  D +T + RGFGF+      DA     
Sbjct: 75  NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIR 134

Query: 107 HMDGQILLGRELTVVFA 123
            +D  +L GR +TV  A
Sbjct: 135 SLDHSVLQGRVITVEKA 151


>AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           +L + + V  L  D     L   F ++G + +  +     TG+PRGFGF+ F D   A D
Sbjct: 9   NLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADD 68

Query: 104 AKYHMDGQILLGRELTVVFAE 124
           A  HM G+ L  + ++V  AE
Sbjct: 69  AIKHMHGRELGNKVISVNKAE 89


>AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           +L + + V  L  D     L   F ++G + +  +     TG+PRGFGF+ F D   A D
Sbjct: 9   NLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADD 68

Query: 104 AKYHMDGQILLGRELTVVFAE 124
           A  HM G+ L  + ++V  AE
Sbjct: 69  AIKHMHGRELGNKVISVNKAE 89